View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14127_low_5 (Length: 447)
Name: NF14127_low_5
Description: NF14127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14127_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 30402231 - 30402661
Alignment:
| Q |
1 |
cgtgtccgctctctgggatttgaacccgacccctacatataatatacaatatctttatctttatcaactgagttaattaattgtacatatatatgggaat |
100 |
Q |
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| T |
30402231 |
cgtgtccgctctctggggattgaacccggcccctacatataatatacaatatctttatctttatcaactgagttaattaattgtacatatatatgggaat |
30402330 |
T |
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| Q |
101 |
atatcaagtgaggccttttagagattacataatttctcttgtaactttgctaatagaagtggtaattgagttgctcataggctatcacacaacccaatta |
200 |
Q |
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| T |
30402331 |
atatcaagtgaggccttttagagattacataatttctcttgtaactttgctaatagaagtggtaattgagttgctcataggctattacacaacccactta |
30402430 |
T |
|
| Q |
201 |
tatttggtacaatgttcctgctatattgagttgctcatatgtttctgctttaatccatgagccacccatcccaattctacatttttacttgatgaaagag |
300 |
Q |
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| T |
30402431 |
tatttggtacaatgttcctgctatattgagttgctcatatgtttctgctttaatccatgagccacccatcccaattctacatttttacttgatgaaagag |
30402530 |
T |
|
| Q |
301 |
tccatgtatggaaataacttatgatgtcatatttctatttattttctctgtatattataagtactaaaaatacatatctaaatgtgaaaatcacatgtat |
400 |
Q |
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| T |
30402531 |
tccatgtatggaaataacttatgatgtcatatttctatttattttctctgtatattataagtactaaaaatacatatctaaatgtgaaaatcacatgtat |
30402630 |
T |
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| Q |
401 |
ttagttgaactcaaactcatttgattgaggt |
431 |
Q |
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| T |
30402631 |
ttagttgaactcaaactcatttgattgaggt |
30402661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 2806504 - 2806545
Alignment:
| Q |
12 |
tctgggatttgaacccgacccctacatataatatacaatatc |
53 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| |
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| T |
2806504 |
tctggggttcgaacccgacccctacatataatatacaatatc |
2806545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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