View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14128_high_5 (Length: 440)
Name: NF14128_high_5
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 45552646 - 45552236
Alignment:
| Q |
14 |
cataggggagaagagaaaaggaaagacaggtgaaactcaattttttggtttaatattatggaagataggtgatgatacttgacagtacttgtgaaaaatt |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45552646 |
cataggggagaagaaaaaaggaaagacaggtgaaactcaattttttggtttaatattatggaagataggtgatgatacttgaccgtacttgtgaaaaatt |
45552547 |
T |
|
| Q |
114 |
attcaaaattctctgaagtactagcccgttgcatttaaagcattcttctatattgaatactttaatgatgaagaattttgattatgcaatgtctattact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45552546 |
attcaaaattctctgaagtactagcccgttgcatttaaagcattcttctatatttaagactttaatgatgaagaattatgattatgcaatgtctattact |
45552447 |
T |
|
| Q |
214 |
cactcatccatttactccttcctctattctcaaagtcttctccttttctctcctaatcctaactctcatataaaaccttactctccccatgtagcaatgt |
313 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45552446 |
cactcttccatttactccttcctcaattctcaaagtcttctccctttctctcctaatcctaactctcatataaaaccttactctccccatgtagcaatgt |
45552347 |
T |
|
| Q |
314 |
agtacatcttaatattagataaagacaatattcccttttcaaagagatctacatactccatgtaggtagtccattcacttcagcctattgttatttaatg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45552346 |
agtacatcttaatattagataaagacaatattcccttttcaaagagatctacatactccatgtaggtagtccattcacttcagcctattgttatttaatg |
45552247 |
T |
|
| Q |
414 |
acaaatattag |
424 |
Q |
| |
|
||||||||||| |
|
|
| T |
45552246 |
acaaatattag |
45552236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University