View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14128_high_7 (Length: 350)
Name: NF14128_high_7
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 42286743 - 42286972
Alignment:
| Q |
20 |
caagatgttaaagagattcagttcattattgattctgggtttcataaccttctctatatca---ctcatattcattctcattcaccaaaacaactcaatc |
116 |
Q |
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| T |
42286743 |
caagatgttaaagagattcagttcattattgattctgggtttcataaccttctctatatcatcactcatattcattctcattcaccaaaacaactcaatc |
42286842 |
T |
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| Q |
117 |
ttcaattttgttgatggattttccaacatcaatgctactactgttactgttactgtcttcaaacaaacaactcaaaatgttgttactaactcatcggtag |
216 |
Q |
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| T |
42286843 |
ttcaattttgttgatggattttccaacatcaatgctactactgttactgttactgtcttcaaacaaacacctcaaaatgttgttactaactcatcggtag |
42286942 |
T |
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| Q |
217 |
gtaagaccattgttacttttgaatcaccta |
246 |
Q |
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| T |
42286943 |
gtaagaccattgttacttttgaatcaccta |
42286972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 42286997 - 42287072
Alignment:
| Q |
265 |
ttgtcaatctctcaagcatctacataacacatgttatttattacattctattattattggtgtcagtgtctctgtg |
340 |
Q |
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| T |
42286997 |
ttgtcaatctctcaagcatctacataacacatgttatttattacattctattattattggtgtcagtgtctctgtg |
42287072 |
T |
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