View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14128_low_10 (Length: 310)
Name: NF14128_low_10
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_low_10 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33951570 - 33951868
Alignment:
| Q |
1 |
ttagattaattaaccttcttttctgtcgagtgttcgtttagttgagcatgttaaatgtaaaagacattaacnnnnnnnnncttacaatctgtctttggtt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33951570 |
ttagattaattaaccttcttttctgtcaagtgttcatttagttgagcatgttaaatgtaaaagacattaacttcttttgtcttacaatctgtctttggtt |
33951669 |
T |
|
| Q |
101 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaatacatcaacattgtggatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33951670 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatatc |
33951769 |
T |
|
| Q |
201 |
cagtgcctgagtttcaaagtgatgaagatgctgtcaataagttaggacttctattgaagaaagttgagggaagtccactatttttggttctggatgatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33951770 |
cagtgcctgagtttcaaagtgatgaagatgctgtcaataggttaggacttctgttgaagaaagttgagggaagtccactattgttggttctggatgatg |
33951868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33974171 - 33974469
Alignment:
| Q |
1 |
ttagattaattaaccttcttttctgtcgagtgttcgtttagttgagcatgttaaatgtaaaagacattaacnnnnnnnnncttacaatctgtctttggtt |
100 |
Q |
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|||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33974171 |
ttagattaattaactttcttttctgtcaagtgttcatttagttgagcatattaaatgtaaaagacattaactttttttgtcttacaatctgtctttggtt |
33974270 |
T |
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| Q |
101 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaatacatcaacattgtggatatc |
200 |
Q |
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| T |
33974271 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatatt |
33974370 |
T |
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| Q |
201 |
cagtgcctgagtttcaaagtgatgaagatgctgtcaataagttaggacttctattgaagaaagttgagggaagtccactatttttggttctggatgatg |
299 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33974371 |
cagtgcctgagtttcaaagtgatgaagatgcagtcaataagttaggacttttgttgaagaaagttgagggaagtccactattgttggttctggatgatg |
33974469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33991090 - 33991388
Alignment:
| Q |
1 |
ttagattaattaaccttcttttctgtcgagtgttcgtttagttgagcatgttaaatgtaaaagacattaacnnnnnnnnncttacaatctgtctttggtt |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
33991090 |
ttagattaattaaccttcttttctgtcaagtgttcatttagttgagcatgttaaatgtaaaagagattaactatttttgtcttacaatctgtctttggtt |
33991189 |
T |
|
| Q |
101 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaatacatcaacattgtggatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
33991190 |
ttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgttgaagactattgtagagagaataattgaacattgcggatatc |
33991289 |
T |
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| Q |
201 |
cagtgcctgagtttcaaagtgatgaagatgctgtcaataagttaggacttctattgaagaaagttgagggaagtccactatttttggttctggatgatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33991290 |
cagtgcctgagtttcaaagtgatgaagatgctgtcaataagttagaacttttgttgaagaaagttgagggaagtccactattgttggttctggatgatg |
33991388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 33941127 - 33941319
Alignment:
| Q |
105 |
taggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaatacatcaacattgtggatatccagt |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| || | ||||||| |||||||| || |
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| T |
33941127 |
taggtaaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgctgaagattattgtagagagattatttgaacattgcggatatccggt |
33941226 |
T |
|
| Q |
205 |
gcctgagtttcaaagtgatgaagatgctgtcaataagttaggacttctattgaagaaagttgagggaagtccactatttttggttctggatga |
297 |
Q |
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| T |
33941227 |
gcctgagtaccaaagtgatgaagatgcggtaaatggattgggacttttgctgaggaaaattgagggaagtccaatattgttagtcctggatga |
33941319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 33912388 - 33912511
Alignment:
| Q |
105 |
taggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaatacatcaacattgtggatatccagt |
204 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||| ||||| || | ||||| |||||||||| || |
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| T |
33912388 |
taggcaaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattatggtacagagactatttgaacatggtggatatccggt |
33912487 |
T |
|
| Q |
205 |
gcctgagtttcaaagtgatgaaga |
228 |
Q |
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|||||||| ||||||||| ||||| |
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| T |
33912488 |
gcctgagtatcaaagtgacgaaga |
33912511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 84 - 299
Target Start/End: Complemental strand, 8278756 - 8278535
Alignment:
| Q |
84 |
acaatctgtctttggttttactaggtaaattcaaggaaaacattat---atttgtcaccttctcaaaaacacccattttgaagactattgtagagagaat |
180 |
Q |
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|||| ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
8278756 |
acaaactgtctttggttttactaggtaaatccatggaaaacattattatatttgtcaccttctcaaaaatgcccacgttgaagactattgtagagaagat |
8278657 |
T |
|
| Q |
181 |
ac-atcaacattgtggatatccagtgcctgagtttcaaagtgatgaagat--gctgtcaataagttaggacttctattgaagaaagttgagggaagtcca |
277 |
Q |
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| || |||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| || ||||||||||||||||||||| |
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| T |
8278656 |
atgatgaacactgtggatatccagtgcctgagtttcaaagtgatgaagatatggtgtcaataggttaggacttctgttcaagaaagttgagggaagtcca |
8278557 |
T |
|
| Q |
278 |
ctatttttggttctggatgatg |
299 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
8278556 |
ctattgttggttctggatgatg |
8278535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 81 - 297
Target Start/End: Original strand, 11309 - 11524
Alignment:
| Q |
81 |
cttacaatctgtctttggttttactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaacacccattttgaagactattgtagagagaat |
180 |
Q |
| |
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|||||||| |||| || |||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| | |
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| T |
11309 |
cttacaat-tgtcctttgttttaacaggaaaattcaaggaaaatattatatttgtcaccttatcgaaaacacccatgttgaagactattgtagagagact |
11407 |
T |
|
| Q |
181 |
acatcaacattgtggatatccagtgcctgagtttcaaagtgatgaagatgctgtcaataagttaggacttctattgaagaaagttgagggaagtccacta |
280 |
Q |
| |
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| | |||||||||||||||||| |||||| |||||||| ||||||||||||||| ||| || | |||| | |||| ||| ||||||||||||||||| |
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| T |
11408 |
atttgaacattgtggatatccagggcctgaatttcaaagagatgaagatgctgtccatagattggaacttttgctgaaaaaatttgagggaagtccacta |
11507 |
T |
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| Q |
281 |
tttttggttctggatga |
297 |
Q |
| |
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|| |||||||| ||||| |
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| T |
11508 |
ttgttggttctagatga |
11524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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