View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14128_low_12 (Length: 225)
Name: NF14128_low_12
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 17701555 - 17701358
Alignment:
| Q |
16 |
ttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaaggtt |
115 |
Q |
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| T |
17701555 |
ttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaagatt |
17701456 |
T |
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| Q |
116 |
caaaccctaagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttcaccttcatctcac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17701455 |
caaaccctaagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttcaccttcttctcac |
17701358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 17662539 - 17662721
Alignment:
| Q |
16 |
ttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattgagaaacaccaaggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
17662539 |
ttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatcatggtactgaaattcagaaaca-------- |
17662630 |
T |
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| Q |
116 |
caaaccctaagttcaaaccctatag-tttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttcaccttcatctcac |
213 |
Q |
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| T |
17662631 |
--------aggttcaaaccctatagttttttttgtacactctcctgagccaaacactcacaacatcatgaacaaaccctattcttcaccttcttctcac |
17662721 |
T |
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