View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14128_low_2 (Length: 524)

Name: NF14128_low_2
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14128_low_2
NF14128_low_2
[»] chr7 (8 HSPs)
chr7 (19-323)||(47292891-47293200)
chr7 (19-323)||(47299498-47299807)
chr7 (19-140)||(47242325-47242446)
chr7 (19-140)||(47256453-47256574)
chr7 (19-163)||(47267213-47267357)
chr7 (19-140)||(47283198-47283319)
chr7 (461-513)||(47293211-47293263)
chr7 (19-137)||(47278608-47278726)
[»] chr5 (1 HSPs)
chr5 (19-140)||(32730996-32731117)
[»] chr3 (2 HSPs)
chr3 (343-467)||(6776225-6776349)
chr3 (389-467)||(6776027-6776105)
[»] chr4 (2 HSPs)
chr4 (343-433)||(817951-818041)
chr4 (383-434)||(818504-818555)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 47292891 - 47293200
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47292891 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccaatgtatggttccaattcatggccactatgaacccaccaca 47292990  T
Q  119 cttgagacgtgtgacctgtcataatataattctaatattaagatacatctatgcatgttgtaaacttgtaatcaattcgatttggcatatgtaattaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292991 cttgagacgtgtgacctgtcataatataattctaatattaagatacatctatgcatgttgtaaacttgtaatcaattcgatttggcatatgtaattaaca 47293090  T
Q  219 tgtacaaatttcaagtaattgtttgaaattgtaggaaatc--atgttttcttcaaatggagcatggaaaa---aaggtaagtgcatatcagtgcaaaaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||     
T  47293091 tgtacaaatttcaagtaattgtttgaaattgtaggaaatcatatgttttcttcaaatggagcatggaaaaattaaggtaagtgcatatcagtgcaaaaaa 47293190  T
Q  314 tttcaaatgg 323  Q
    ||||||||||    
T  47293191 tttcaaatgg 47293200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 47299498 - 47299807
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  47299498 ctcctcgagccatttctgcccatgcattcatgaattgtctcaaaccagctgcatcgcccatcgtatggttccaattcatggccactatgaacccaccaca 47299597  T
Q  119 cttgagacgtgtgacctgtcataatataattctaatatta-----agatacatctatgcatgttgtaaacttgtaatcaattcgatttggcatatgtaat 213  Q
    |||||||||||||||||||||| || ||| ||||||||||     ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47299598 cttgagacgtgtgacctgtcat-atttaaatctaatattaagtagagatatatccatgcatgttgtaaacttgtaatcaattcgatttggcatatgtaat 47299696  T
Q  214 taacatgtacaaatttcaagtaattgtttgaaattgtaggaaatc--atgttttcttcaaatggagcatggaaaaaaggtaagtgcatatcagtgcaaaa 311  Q
    ||||||||||||| |||||||||||||||||||  ||||||| ||  ||||||||||| ||||||||||||||||||| ||||||||||  ||||||||     
T  47299697 taacatgtacaaagttcaagtaattgtttgaaaccgtaggaattcatatgttttcttc-aatggagcatggaaaaaagttaagtgcatacaagtgcaaag 47299795  T
Q  312 attttcaaatgg 323  Q
     |||| ||||||    
T  47299796 ctttttaaatgg 47299807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 47242446 - 47242325
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| |||||| ||||||||    
T  47242446 ctcctcgagccatttctgcccatgcaatcatgaattgtctcaaaccagctgcatcacccattgtatggttcacactcaaggccaatatgaaaccaccaca 47242347  T
Q  119 cttgagacgtgtgacctgtcat 140  Q
    ||||||||||||||||||||||    
T  47242346 cttgagacgtgtgacctgtcat 47242325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 47256574 - 47256453
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||| |||||||||||||||| || ||||||||| ||||||| | |||||||||||||||||||| || ||| ||||| |||||| ||||||||    
T  47256574 ctcctcgagctatttctgcccatgcagacacgaattgtcttaaaccagatccatcacccattgtatggttcaaactcaaggccaatatgaaaccaccaca 47256475  T
Q  119 cttgagacgtgtgacctgtcat 140  Q
    |||||||||||| |||||||||    
T  47256474 cttgagacgtgtaacctgtcat 47256453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 47267357 - 47267213
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||||||||||||||| ||| |||| ||| || ||||||||||| |||| | ||||||||||||| ||| || | | | |||||| |  || ||    
T  47267357 ctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatcgctcattgtatggttcaaatacacgactagtatgaaactgccgca 47267258  T
Q  119 cttgagacgtgtgacctgtcataatataattctaatattaagata 163  Q
    ||||||||||||||||||||||| | ||| |||||||| ||||||    
T  47267257 cttgagacgtgtgacctgtcatattttaaatctaatatcaagata 47267213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 47283319 - 47283198
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||| | |||||| || |||| ||||||||| || | | |||| ||||| ||||| ||    
T  47283319 ctcctcgagccatttctgcccagacattcatgaattgtttcaaacctgttgcatcgccaattgcatggttccagtttacgcccacaatgaaaccaccgca 47283220  T
Q  119 cttgagacgtgtgacctgtcat 140  Q
    |||||||||||||| |||||||    
T  47283219 cttgagacgtgtgatctgtcat 47283198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 47293211 - 47293263
Alignment:
Q  461 aattaaaaatagattggtttttaaagcatgtgaaatataggatttggacctat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293211 aattaaaaatagattggtttttaaagcatgtgaaatataggatttggacctat 47293263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 47278726 - 47278608
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    ||||||||||||||||||||||  || |||| |||||| ||||||| | ||||||  | |||| ||| |||||||| | | |||| || || |||||  |    
T  47278726 ctcctcgagccatttctgcccaaacattcataaattgtttcaaacctgttgcatcggcaattgcatgattccaatttacgcccacaataaaaccaccgta 47278627  T
Q  119 cttgagacgtgtgacctgt 137  Q
    |||||||||||||||||||    
T  47278626 cttgagacgtgtgacctgt 47278608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 32731117 - 32730996
Alignment:
Q  19 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttccaattcatggccactatgaacccaccaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| |||||| ||||||||    
T  32731117 ctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatcacccattgtatggttcacactcaaggccaatatgaaaccaccaca 32731018  T
Q  119 cttgagacgtgtgacctgtcat 140  Q
    ||||||||||||||||||||||    
T  32731017 cttgagacgtgtgacctgtcat 32730996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 6776225 - 6776349
Alignment:
Q  343 ttgttgcacgattcctattttgtttttcagttcaattaat-aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaaannnnnnn 441  Q
    ||||||||||||||||||||| | ||| | || ||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||           
T  6776225 ttgttgcacgattcctattttttgtttaa-ttaaattaaccaattttaaatgagaagatgatgtggcagattgttattggatgactgtgtaaactatctt 6776323  T
Q  442 nacacaatcagtgcactacaattaaa 467  Q
     ||||  |||||||||||||||||||    
T  6776324 tacactgtcagtgcactacaattaaa 6776349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 467
Target Start/End: Complemental strand, 6776105 - 6776027
Alignment:
Q  389 aaatgagaaaatgatgtggcagattgttattggatgactgtgtaaannnnnnnnacacaatcagtgcactacaattaaa 467  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||        ||||  |||||||||||||||||||    
T  6776105 aaatgagaagatgatgtggcagattgttattggatgactgtgtaaactatctttacactgtcagtgcactacaattaaa 6776027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 818041 - 817951
Alignment:
Q  343 ttgttgcacgattcctattttgtttttcagttcaattaat-aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaa 433  Q
    ||||||||||||||||||||| | ||| | || ||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  818041 ttgttgcacgattcctattttttgtttaa-ttaaattaaccaattttaaatgagaagatgatgtggcagattgttattggatgactgtgtaa 817951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 818504 - 818555
Alignment:
Q  383 aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaaa 434  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  818504 aattttaaatgagaagatgatgtggcaaattgttattggatgactgtgtaaa 818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University