View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14128_low_3 (Length: 445)
Name: NF14128_low_3
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 32354168 - 32354588
Alignment:
| Q |
15 |
aatttcaaccaatggctctcatggctttgccaaccaaatattcactcccccaatttatataaatataggtccatttcctattccctctaaagtctaaacc |
114 |
Q |
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| T |
32354168 |
aatttcaaccaatggctctcatggctttgccaaccaaatactcactcccccaatttatataaatataggtccatttcctattccctctaaagtataaacc |
32354267 |
T |
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| Q |
115 |
atttatctgttttctttgagataccccaactacttttttgcaaaacttaattagtttctttgattaacaaaaggtcaaggaaaacatacaagggctttag |
214 |
Q |
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| T |
32354268 |
atttatctgttttctttgagataccccaactacttttttgcaaaacttaattagtttctttgattaacaaaaggtcaaggaaaacatacaagggctttag |
32354367 |
T |
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| Q |
215 |
ttaattacaatttgtgatcaagattaatttatcaaagatgaggaagatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgct |
314 |
Q |
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| T |
32354368 |
ttaattacaatttgtgatcaagattaatttatc----------tagatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgct |
32354457 |
T |
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| Q |
315 |
ctcctcataacccctagaaaatgctcttcttctaaatttccaaggttggaacccatcattgaagaaggagctgaaagtttacatattaatatgccaaaga |
414 |
Q |
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| T |
32354458 |
ctcctcataacccctagaaaatgctcttcttctaaattttcaaggttggaacctatcattgaagaaggagctgaaagtttacatattaatatgccaaaga |
32354557 |
T |
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| Q |
415 |
agatgttgtttcttgctcctgttttcatttc |
445 |
Q |
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| T |
32354558 |
agatgttgtttcttgctcctgttttcatttc |
32354588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 429
Target Start/End: Complemental strand, 33135462 - 33135294
Alignment:
| Q |
255 |
aggaagatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaatttc |
354 |
Q |
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| T |
33135462 |
aggaagatggtgaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaacccctaaaaaatg---ttcttctaaatttc |
33135366 |
T |
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| Q |
355 |
caaggttggaacccatcattgaagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttcttg |
429 |
Q |
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| T |
33135365 |
caaggttggagcctatcattgaagaaggacctgagagcttccaaat---tatgccaaagaggatgttatttcttg |
33135294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 438
Target Start/End: Complemental strand, 28457612 - 28457446
Alignment:
| Q |
266 |
gaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaatttccaaggttggaa |
365 |
Q |
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| T |
28457612 |
gaagatggaaatgagaagcatccaaaattgccgtgaggtagcttctgctctcatcataacccctaaaaaatg---ttgttccaaatttccaaggttggag |
28457516 |
T |
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| Q |
366 |
cccatcattgaagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttcttgctcctgttt |
438 |
Q |
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| T |
28457515 |
tctatcattgaagaaggatccgagagcttcca---aactatgccaaagaagatgttgtttcttgttcccgttt |
28457446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 429
Target Start/End: Complemental strand, 39182439 - 39182272
Alignment:
| Q |
255 |
aggaagatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaatttc |
354 |
Q |
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| T |
39182439 |
aggaagacggtgaagatggaaatgagaagcatccaaaatttccgcgaggtagcttttgctctcatcataaccc-taaaaaatg---ttgttctaaatttc |
39182344 |
T |
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| Q |
355 |
caaggttggaacccatcattgaagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttcttg |
429 |
Q |
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| T |
39182343 |
caaggttggagcctatcattgaagaaggatccgagagcttcca---tactatgccaaagaagatgttgtttcttg |
39182272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 33135689 - 33135623
Alignment:
| Q |
15 |
aatttcaaccaatggctctcatggctttgccaaccaaatattcactcccccaatttatataaatata |
81 |
Q |
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| T |
33135689 |
aatttcaaccaatgactctcatggcttcaccaactaaatattcactgccccaaaatatataaatata |
33135623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 40029452 - 40029353
Alignment:
| Q |
281 |
aggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaatttccaaggttggaacccatcattgaagaa |
380 |
Q |
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|||||| ||||||||||||||||| || |||||||| |||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
40029452 |
aggcattcaaaattgtggtgaggtagctcctgctctgatcataacccctaaaaaatg---ttcttctaaatttccaaggttggagcctatcattgaagaa |
40029356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 40029648 - 40029584
Alignment:
| Q |
15 |
aatttcaaccaatggctctcatggctttgccaaccaaatattcactcccccaatttatataaata |
79 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | | |||||| |||||||||| |
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| T |
40029648 |
aatttcaaccaatgattctcatggctttgccaaccaaatattgaataccccaaaatatataaata |
40029584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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