View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14128_low_6 (Length: 368)
Name: NF14128_low_6
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 172 - 359
Target Start/End: Complemental strand, 33817621 - 33817434
Alignment:
| Q |
172 |
ggacaacataagactttgatgagtcgggaccttgtcgaggagcagtttccaagaaaatgcgatatctttttccggattaacactcttccaaaccttagaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33817621 |
ggacaacataagactttgatgagtcggggccttgtcgaggagcagttttcaagaaaatgcgataactttttccggattaacactcttccaaaccttagaa |
33817522 |
T |
|
| Q |
272 |
atgatttggagttgatccatcgagaaaggtagatttgccgagaaagtccaataagtcaagttattcgagtaaataccactagtattat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33817521 |
atgatttggagttgatccatcgagaaagatagatttgccgagagagtccaataagtcaagttattcgagtaaataccactagtattat |
33817434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 33817730 - 33817608
Alignment:
| Q |
30 |
attgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagcagatatgcgtttnnnnnnngtacaggggagtattcaaagtctcaaact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
33817730 |
attgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagcagatatgcgtttaaaaaaagtaca-aggagtattc-aagtctcaaacg |
33817633 |
T |
|
| Q |
130 |
cattacaagatggacaacataagac |
154 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33817632 |
cattacaagatggacaacataagac |
33817608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University