View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14128_low_8 (Length: 337)
Name: NF14128_low_8
Description: NF14128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14128_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 3431970 - 3432274
Alignment:
| Q |
1 |
tatattcaacgctacatatatatgaatatgttttcaaattatacaaatgtaaagccatatttacacagatgaaataatcaatataaatacaagatacaca |
100 |
Q |
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| T |
3431970 |
tatattcaacgctacatat----gaatatgttttcaaattatacaaatgtaaagccatatttacacagatgaaataatcaatataaatacaagatacaca |
3432065 |
T |
|
| Q |
101 |
cacataaatatatactgtattttactgtaagaaatacgtatatatttaccggtcaacacacgggcaatataaatacatatactttacctcnnnnnnnnnn |
200 |
Q |
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| T |
3432066 |
cacataaatatatactgtattttactgtaagaaatacgtatatatttaccggtcaacacacgagcaatataaatacatatactttacctc---------- |
3432155 |
T |
|
| Q |
201 |
nnnnnnnntgcacatacataccatgcatacatatatcagtgtggtcctccttcacaaaataaaataaactaatacacacacacatatatatcaagtggtt |
300 |
Q |
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| T |
3432156 |
--aaaaaatacacatacataccatgcatacatatatcagtgtggtcctccttcacaaaataaaataaactaatacacacacacatatatatcaagtggtt |
3432253 |
T |
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| Q |
301 |
caaattttcaaccttcaagct |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3432254 |
caaattttcaaccttcaagct |
3432274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 11913510 - 11913357
Alignment:
| Q |
21 |
tatgaatatgttttcaaattatacaaatgtaaagccatatttacacagatgaaataatcaatataaatacaagatacacacacataaatatatactgtat |
120 |
Q |
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| T |
11913510 |
tatgaatatgtttttaaattatacaaatgtaaagccatatttacac---tgaaataatcaatataaatacaagatacacacacataaatatatactgtat |
11913414 |
T |
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| Q |
121 |
tttactgtaagaaatacgtatatatttaccggtcaacacacgggcaatataaataca |
177 |
Q |
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| T |
11913413 |
tttactgtaagaaatacatatatatttactggtcaacacacgagcaatataaataca |
11913357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 11898230 - 11898193
Alignment:
| Q |
284 |
atatatatcaagtggttcaaattttcaaccttcaagct |
321 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
11898230 |
atatatatcaagtggtccaaattttcaaccttcaagct |
11898193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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