View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14129_high_1 (Length: 594)

Name: NF14129_high_1
Description: NF14129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14129_high_1
NF14129_high_1
[»] chr7 (3 HSPs)
chr7 (18-433)||(43938787-43939202)
chr7 (477-543)||(43939308-43939374)
chr7 (535-580)||(43939382-43939427)
[»] chr5 (2 HSPs)
chr5 (477-570)||(34289973-34290060)
chr5 (477-570)||(34296607-34296694)
[»] chr1 (4 HSPs)
chr1 (477-570)||(24489824-24489911)
chr1 (477-570)||(24498158-24498245)
chr1 (477-570)||(32626928-32627015)
chr1 (477-565)||(24485334-24485416)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 43938787 - 43939202
Alignment:
Q  18 tgttttgcttttgtttgagttcgttttcatatgaatttcaagagaaacaaacaattaaccgaagaagtataatgtatgaagtaagattattctgctttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43938787 tgttttgcttttgtttgagttcgttttcatatgaatttcaagagaaacaaacaattaaccgaagaagtataatgtatgaagtaagattattctgctttct 43938886  T
Q  118 taataacaaatggatatacatacctgaatctccccggatttgattttcttgacagttccaacgtcaattacaggaaacttgccatacttcatcttcatgg 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43938887 ttataacaaatggatatacatacctgaatctccccggatttgattttcttgacagttccaacgtcaattacaggaaacttgccatacttcatcttcatgg 43938986  T
Q  218 tgaatgggccttcactaggaaaaggtataccatatttgctcagatctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43938987 tgaatgggccttcactaggaaaaggtataccatatttgctcagatctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtga 43939086  T
Q  318 cagatagttcaacaaaaccccaccataatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939087 cagatagttcaacaaaaccccaccataatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagat 43939186  T
Q  418 aaattccattttgatc 433  Q
    ||||||||||||||||    
T  43939187 aaattccattttgatc 43939202  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 543
Target Start/End: Original strand, 43939308 - 43939374
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatat 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatat 43939374  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 580
Target Start/End: Original strand, 43939382 - 43939427
Alignment:
Q  535 tatatatattgccatacacaatggccatcagaatcatagaattatc 580  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  43939382 tatatatattgccatacactatggccatcagaatcattgaattatc 43939427  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 34289973 - 34290060
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 34290060  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 34296607 - 34296694
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 34296694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 24489911 - 24489824
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 24489824  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 24498245 - 24498158
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 24498158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 32627015 - 32626928
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 32626928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 24485416 - 24485334
Alignment:
Q  477 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  |||||||||||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcag 24485334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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