View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14129_high_5 (Length: 433)
Name: NF14129_high_5
Description: NF14129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14129_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 1228565 - 1228992
Alignment:
| Q |
1 |
agagaaataaagatttagacctactttttcactctcctccactatttgtaaataatttaattaatgccttttttattggatgatgacttagtcatatatt |
100 |
Q |
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| T |
1228565 |
agagaaataaagatttagacctactttttcactctcctccactatttgtaaataatttaattaatgccttttttattggatgatgacttagtcatatatt |
1228664 |
T |
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| Q |
101 |
tatataactatctcccttccttcactcttcccaactgtatacgtatgtagtatagtgtagtgttgtgttgtcatctctgatcttcttgtgagtaaaagct |
200 |
Q |
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| T |
1228665 |
tatataactatctcccttccttcactcttcccaactgtatacgtatgtagtatagtgtagtgt-----tgtcatctctgatcttcttgtgagtaaaagct |
1228759 |
T |
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| Q |
201 |
tccattcatggctaagaaatctcagaaaaatctcaaaaacacttctacttcttctacctcttccaccaccaaacgtaaacgtaaaagcattccaagaaac |
300 |
Q |
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| T |
1228760 |
tccattcatggctaagaaatctcagaaaaatctcaaaaacacttctacttcttcttcctcttccaccaccaaacgtaaacgtaaaagcattccaagaaac |
1228859 |
T |
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| Q |
301 |
tcacctccacaaagaagctcagtttataggggtgccacaaggttaattaattaatcaaattttgatgtttttcattttgatctttatgtttttgtgtcct |
400 |
Q |
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| T |
1228860 |
tcacctccacaaagaagctcagtttataggggtgtcacaaggttaattaattaatcaaattttgatgtttttcattttgatctttatgtttttgtgtcct |
1228959 |
T |
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| Q |
401 |
ctaaaattgataatattgttttagacatcgttg |
433 |
Q |
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| T |
1228960 |
ctaaaattgataatattgttttagacatcgttg |
1228992 |
T |
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