View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14129_low_7 (Length: 248)
Name: NF14129_low_7
Description: NF14129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14129_low_7 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 8725104 - 8725248
Alignment:
| Q |
104 |
ttcaacacgacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaa |
203 |
Q |
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| T |
8725104 |
ttcaacacgacacaattatcaacaagacagcgtgtatacaagatagggttataaatagatctgctagaagacatcattaaacattctaagaaaatcccaa |
8725203 |
T |
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| Q |
204 |
tgcatggtctatcaaatcaacaaaaatgttaatctatctcaagag |
248 |
Q |
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| T |
8725204 |
tgcatggtctatcaaatcaacaaaaatgttaatctatctcaagag |
8725248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 8679001 - 8679132
Alignment:
| Q |
117 |
aattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggtctatc |
216 |
Q |
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| T |
8679001 |
aattatcaacaagacaacatgtatacatgatggggttataaatagatctactaaaatacatcactaaacattctgggaaaatcccaatgcagggtctatc |
8679100 |
T |
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| Q |
217 |
aaatcaacaaaaatgttaatctatctcaagag |
248 |
Q |
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| T |
8679101 |
aaatcaacacaaatttgaatctatctcaagag |
8679132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 8725028 - 8725071
Alignment:
| Q |
34 |
caaaacacagatattaaagaataagacactcttgctaatgcaag |
77 |
Q |
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| T |
8725028 |
caaaacacagatattaaagaagaagacactcttgctaatgcaag |
8725071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 23434607 - 23434471
Alignment:
| Q |
112 |
gacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggt |
211 |
Q |
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| T |
23434607 |
gacacaattatcaacaagacagcatgtatacatgatggggttataaatagatctactaaaatacattacttaaaattctgggaaaatcccaatgcatggt |
23434508 |
T |
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| Q |
212 |
ctatcaaatcaacaaaaatgttaatctatctcaagag |
248 |
Q |
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| T |
23434507 |
ctaacaaatcaacacaaatgtgaatctatctcaagag |
23434471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 21232490 - 21232354
Alignment:
| Q |
112 |
gacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggt |
211 |
Q |
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|||||||||||||||||||| ||||| |||| ||| ||||||||||||||| ||| |||| |||||||||||||| | |||||||| ||||||| ||| |
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| T |
21232490 |
gacacaattatcaacaagacgacgtgtgtacatgatggggttataaatagatatacaagaatacatcactaaacatcatgggaaaatctcaatgcagggt |
21232391 |
T |
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| Q |
212 |
ctatcaaatcaacaaaaatgttaatctatctcaagag |
248 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |
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| T |
21232390 |
ctatcaaatcaacacaaatgttaatttatctcaagag |
21232354 |
T |
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