View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_10 (Length: 454)
Name: NF1412_high_10
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 7755442 - 7755019
Alignment:
| Q |
16 |
cagagaagattatgaagatggaaacaaccttaagaaaccatttcttaacactggtagctggtacagaatgggatcaaaacaaactaatatcttaaactct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7755442 |
cagagaagattatgaagatggaaacaaccttaagaaaccatttcttaacactggtagctggtacagaatgggatcaaaacaaactaatatcttaaattct |
7755343 |
T |
|
| Q |
116 |
tcaactcaatatgtcatgcgagattcttctgtttctgtcctcctttgtgtcctcattgttgcattgggtcctcttcaattcggcttcacggtgctactat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755342 |
tcaactcaatatgtcatgcgagattcttctgtttctgtcctcctttgtgtcctcattgttgcattgggtcctcttcaattcggcttcacggtgctactat |
7755243 |
T |
|
| Q |
216 |
tgcttcatatcgtgaactaacnnnnnnnaagcctttactttctttggaatgatatataagtaaaaagatccaaaaagttaaatgtatttgatccaaattc |
315 |
Q |
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| T |
7755242 |
tgcttcatatcgtgatctaacttttcttaagcctttactttctttggaatgatatataagtaaaaagatccaaaaagttaaatgtatttgatccaaattc |
7755143 |
T |
|
| Q |
316 |
tatatcgaataaatttaactctttgaattttttgtctatatttcattcgagacgaagtatttcccaacaatttaacacgttttacactctcttttctttg |
415 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
7755142 |
tatttcgaataaatttaactttttgaattttttgtctatatttcattcgagacgaagtatttgctaacaatttaacacgttttacactctcttttctttg |
7755043 |
T |
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| Q |
416 |
tcctgttttaatatgattgctttt |
439 |
Q |
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| T |
7755042 |
tcctgttttaatatgattgctttt |
7755019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 7920069 - 7920013
Alignment:
| Q |
257 |
ctttggaatgatatataagtaaaaagatccaaaaa-gttaaatgtatttgatccaaa |
312 |
Q |
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| T |
7920069 |
ctttggaatgaaatataaccaaaaatatccaaaaaagttaaatgtatttggtccaaa |
7920013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 45335889 - 45335850
Alignment:
| Q |
287 |
aaaaagttaaatgtatttgatccaaattctatatcgaata |
326 |
Q |
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| T |
45335889 |
aaaaagttaaatgtatttgatccaaattttatatctaata |
45335850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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