View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_high_107 (Length: 214)
Name: NF1412_high_107
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_107 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3067831 - 3067634
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067831 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
3067732 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3067731 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacacgtcggtgtcgaaaaagttactca |
3067634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3071470 - 3071273
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
||||||||||||||||| ||| | | ||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||| | |
|
|
| T |
3071470 |
aattttgatggagtgttttcacctttcaagcatccaaagaactcaactgatagtggaaattggactacagtgtggtctcatcctaaaaatatatgtcaat |
3071371 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
|| || || | |||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
3071370 |
atattgttagttcaggtagtggtgtttgtggatataataccatctgcactttgggagatgataagagaccaacatgtcggtgtccaaaacgttactca |
3071273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3055496 - 3055693
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||| ||||||||| |||| | |||||| |||||||||||| | ||||| ||||||||| ||| |
|
|
| T |
3055496 |
aattttgatggagtgttcacactttacaagtatcccaagaattcaactgagagtgatgtttggaccatagtgtggtctaaacctgataatatatgtaatt |
3055595 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
|| || |||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||| |||| | |||||| |
|
|
| T |
3055596 |
atattgctaatgaagggagtggtgtttgtggatataatagcttctgcactttgggagttgataagagaccaacatgtcagtgtccaaaacgatactca |
3055693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3040487 - 3040684
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| |||| ||||||||||| |||| |||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
3040487 |
aattttgatggagtgttttcacttttcaagcatccgaagaattcaactgatattggaaattggactacagtgtggtctcatcctcgaaatatatgtcatt |
3040586 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||| ||| |||||||| | | ||||||||| |
|
|
| T |
3040587 |
attttgttactgaaggtagtggtgtttgtggatataatagcatatgcactttgggagatgatacgagaccagcatttcggtgtccagatagttactca |
3040684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3063795 - 3063607
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||| | |||| ||||||||| | ||| |||||| |||| ||||||||| || |
|
|
| T |
3063795 |
aattttgatggagtgttcacactttacaagcatcctaagagttcaactaagagtgaaggttggaccacagtatggtctaagccctttaatatatgtactt |
3063696 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaa |
189 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| ||||| |||| |
|
|
| T |
3063695 |
atactgttagtgcaggtagtggtgtttgtggatataatagcttctgcactttgggagatgataagagaccaaaatgtcagtgtccaaaa |
3063607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3042676 - 3042873
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
||||||||||| |||||| || || |||||||| |||| ||||| |||| ||| ||||||||| | ||||||||| ||||||| ||||||||| || |
|
|
| T |
3042676 |
aattttgatggtgtgttcgcagtttacaagcatccgaagaattcaattgatggtgaaggttggaccactgtgtggtctaagcctgataatatatgtactt |
3042775 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
|| | | ||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||| ||||| ||||||||||||| |
|
|
| T |
3042776 |
atactgtcagtgcaggtagtggtgtttgtggatataatagcttctgcactttgggagttgataagtgaccaacatgtcagtgtccaaaaagttactca |
3042873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 3034634 - 3034787
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtggtctcagcctgaaaatatatgtcatt |
100 |
Q |
| |
|
||||||||||| |||||| || || |||||||| |||| ||||| |||| ||| ||||||||| | |||||||||| ||||||| ||||||||| || |
|
|
| T |
3034634 |
aattttgatggtgtgttcgcagtttacaagcatccgaagaattcaattgatggtgaaggttggaccacagtgtggtctaagcctgataatatatgtactt |
3034733 |
T |
|
| Q |
101 |
attttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgg |
154 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3034734 |
atattgttagtgcaggtagtggtgtttgtggatataatagcttatgcactttgg |
3034787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 25125466 - 25125401
Alignment:
| Q |
133 |
tataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactca |
198 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
25125466 |
tataatagcttctgcactttgggagttgataagagaccaacatgtcagtgtccaaaaagttactca |
25125401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3065911 - 3065838
Alignment:
| Q |
1 |
aattttgatggagtgttcacacttcttaagcatccaaagagttcaactgatagtggaggttggactatagtgtg |
74 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||||||||||||| ||||| |||| |||||||| |||||||| |
|
|
| T |
3065911 |
aattttgacggggtgtttacactttacaagcatccaaagagttcgactgagagtgaaggttggatcatagtgtg |
3065838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University