View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_high_111 (Length: 208)
Name: NF1412_high_111
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_111 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0041 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 111605 - 111817
Alignment:
| Q |
1 |
tgaaatgagctcatatccacttttatgtatcatcaaatcatgctatgaataaataattagtgtattgttaat------gtattctttattagttgttaag |
94 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||||| || ||| || ||| ||||| |||||||||||||||||||||| |
|
|
| T |
111605 |
tgaaatgagctcatatccacctgtatatatcatcaaatcatgctatgattagtgtatt-gttaattattaatcagctggtattctttattagttgttaag |
111703 |
T |
|
| Q |
95 |
ttaatatttttctcgttcaactgaatttgttgaattcttattcttcaactcctttaactactcaacccatgttgtaggagtcgaatcagtgacaagtgat |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111704 |
ttaatatttttctcattcaactgaatttgttgaattcttattcttcaactcctttaactactcaacccatgttgtaggagtcgaatcagtgacaagtgat |
111803 |
T |
|
| Q |
195 |
gaagggaaggattt |
208 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
111804 |
gaagggaaggattt |
111817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41143706 - 41143494
Alignment:
| Q |
1 |
tgaaatgagctcatatccacttttatgtatcatcaaatcatgctatgaataaataattagtgtattgttaat------gtattctttattagttgttaag |
94 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||||| || ||| || ||| ||||| |||||||||||||||||||||| |
|
|
| T |
41143706 |
tgaaatgagctcatatccacctgtatatatcatcaaatcatgctatgattagtgtatt-gttaattattaatcagctggtattctttattagttgttaag |
41143608 |
T |
|
| Q |
95 |
ttaatatttttctcgttcaactgaatttgttgaattcttattcttcaactcctttaactactcaacccatgttgtaggagtcgaatcagtgacaagtgat |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143607 |
ttaatatttttctcattcaactgaatttgttgaattcttattcttcaactcctttaactactcaacccatgttgtaggagtcgaatcagtgacaagtgat |
41143508 |
T |
|
| Q |
195 |
gaagggaaggattt |
208 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41143507 |
gaagggaaggattt |
41143494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University