View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_12 (Length: 424)
Name: NF1412_high_12
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 153 - 408
Target Start/End: Original strand, 4893494 - 4893749
Alignment:
| Q |
153 |
actctagttactctaaacatgaaaccaaacctaaatagtcatgtcagcaattcatattcatatgatgtgaattaattggtgcaaagttgttacaactact |
252 |
Q |
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| T |
4893494 |
actctagttgctctaaacatgaaaccaaacctaaatagtcatgttagcaattcatattcatatgatgtgaattaattggtgcaaggttgttacaactact |
4893593 |
T |
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| Q |
253 |
atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtnnnnnnntctacagatggacaaggcttcagtcctaggagatg |
352 |
Q |
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| T |
4893594 |
atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtaaaaaaatctacagatggacaaggcttcagtcctaggagatg |
4893693 |
T |
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| Q |
353 |
caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaac |
408 |
Q |
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| T |
4893694 |
caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaac |
4893749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 4893322 - 4893466
Alignment:
| Q |
7 |
atgaatgtaaagtgatttatgtttttaatacatttatatagaattgatttgaacaacaaatttaagtgnnnnnnngatcacatttagactcaaaagctat |
106 |
Q |
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| T |
4893322 |
atgaatgtaaagtgatttatgtttttaatacatttacata-aattgatttgaacaacaaatttaagtgaaaaaaagatcacatttagactcaaaagctat |
4893420 |
T |
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| Q |
107 |
aaatcctaacctctatttaaaatcaattttagatgcaaaatcaatt |
152 |
Q |
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| T |
4893421 |
aaatcctaacctctatttaaaatcaattttagatgcaaaatcaatt |
4893466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 4917113 - 4917203
Alignment:
| Q |
318 |
tctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaac |
408 |
Q |
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| T |
4917113 |
tctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaac |
4917203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 4910061 - 4910138
Alignment:
| Q |
321 |
acagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattaga |
398 |
Q |
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| T |
4910061 |
acagacggacaatacttcagtcataggagatgctatcaagcatgtgaaagagctccaggaacgtttgagagtattaga |
4910138 |
T |
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