View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_13 (Length: 422)
Name: NF1412_high_13
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 21055984 - 21056304
Alignment:
| Q |
13 |
aaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaaga |
112 |
Q |
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| T |
21055984 |
aaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaaga |
21056083 |
T |
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| Q |
113 |
acttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgtt |
212 |
Q |
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| T |
21056084 |
acttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgtt |
21056183 |
T |
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| Q |
213 |
cattgatttcttcagcagtgaaactcatctccaccgagtaccctttctggaaccgtagcacaggatcagaccatgtcttcgtagcttcacatgatttcgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056184 |
cattgatttcttcagcagtgaaactcatctccaccgagtaccctttctggaaccgtagcacaggatcagaccatgtcttcgtagcttcacatgatttcgg |
21056283 |
T |
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| Q |
313 |
ttcttgtttccacaccctggt |
333 |
Q |
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| T |
21056284 |
ttcttgtttccacaccctggt |
21056304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 12172979 - 12172761
Alignment:
| Q |
31 |
gcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaa |
130 |
Q |
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| T |
12172979 |
gcttacaaactcaagatgcaaaactcgtttatttgcttcaaaagttgaaattcatagagctttattaacaagtgatgttagaacttttgacccttacgaa |
12172880 |
T |
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| Q |
131 |
gctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgttcattgatttcttcagcag |
230 |
Q |
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| T |
12172879 |
gctgattttttctttgtagcaatttatgtttcttgtaacttcagcactgttaatggcttccctgcaattggtcatgcacgttcgttgatttcttcagtag |
12172780 |
T |
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| Q |
231 |
tgaaactcatctccaccga |
249 |
Q |
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| T |
12172779 |
ttaatctcatctccaccga |
12172761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 309
Target Start/End: Complemental strand, 35417290 - 35417031
Alignment:
| Q |
50 |
aaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtac |
149 |
Q |
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||||| ||||| ||||||||||||||||||||||| | || || || | ||||||||| |||||||||||||| |||||||||||||| |||||||| | |
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| T |
35417290 |
aaaacacatttgtttgcttcagaagttgctattcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttctttgttc |
35417191 |
T |
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| Q |
150 |
cagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgttcattgatttcttcagcagtgaaactcatctccaccga |
249 |
Q |
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| T |
35417190 |
ctgtttatgtttcttgcaacttcagcacagttaatggttttccggcaattggacatgcccgtgctctcatttcctccgcggttgagctcgtctccaccga |
35417091 |
T |
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| Q |
250 |
gtaccctttctggaaccgtagcacaggatcagaccatgtcttcgtagcttcacatgattt |
309 |
Q |
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|| || || ||||| || |||| |||||| |||||||| || || ||||| |||||||| |
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| T |
35417090 |
atatccattttggaatcgaagcagaggatccgaccatgtttttgtcgcttctcatgattt |
35417031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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