View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_high_17 (Length: 387)

Name: NF1412_high_17
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_high_17
NF1412_high_17
[»] chr2 (23 HSPs)
chr2 (4-371)||(12801220-12801596)
chr2 (67-172)||(42327363-42327467)
chr2 (58-181)||(42602549-42602671)
chr2 (67-181)||(37480079-37480192)
chr2 (67-181)||(4438938-4439051)
chr2 (67-181)||(16918537-16918650)
chr2 (71-181)||(21213777-21213886)
chr2 (70-134)||(23465926-23465990)
chr2 (67-178)||(42922418-42922529)
chr2 (62-177)||(19244108-19244222)
chr2 (67-134)||(29503275-29503342)
chr2 (67-178)||(40416352-40416462)
chr2 (67-181)||(5147639-5147751)
chr2 (67-181)||(34041547-34041660)
chr2 (67-172)||(26545844-26545948)
chr2 (67-178)||(14500281-14500391)
chr2 (67-162)||(30808625-30808719)
chr2 (110-177)||(37971942-37972008)
chr2 (67-172)||(39714996-39715100)
chr2 (81-181)||(2750585-2750684)
chr2 (197-281)||(4159534-4159617)
chr2 (74-178)||(12086091-12086194)
chr2 (70-134)||(41202257-41202321)
[»] chr4 (31 HSPs)
chr4 (193-371)||(13434270-13434448)
chr4 (193-370)||(8016664-8016841)
chr4 (67-181)||(37109310-37109423)
chr4 (67-181)||(7292757-7292870)
chr4 (80-182)||(38869785-38869886)
chr4 (77-181)||(30938178-30938281)
chr4 (112-179)||(2732043-2732109)
chr4 (67-181)||(7949413-7949526)
chr4 (62-172)||(39509069-39509178)
chr4 (67-178)||(51250484-51250594)
chr4 (72-178)||(2184994-2185099)
chr4 (67-181)||(31759617-31759730)
chr4 (66-172)||(43623412-43623517)
chr4 (62-99)||(4911272-4911309)
chr4 (67-172)||(19238545-19238649)
chr4 (61-181)||(4249175-4249294)
chr4 (80-172)||(13015444-13015535)
chr4 (110-178)||(46295144-46295211)
chr4 (62-158)||(2622377-2622476)
chr4 (67-178)||(19680750-19680860)
chr4 (67-181)||(37274418-37274532)
chr4 (67-134)||(41346968-41347035)
chr4 (63-134)||(43728395-43728466)
chr4 (61-172)||(55427168-55427278)
chr4 (67-181)||(37720173-37720286)
chr4 (107-181)||(38838841-38838914)
chr4 (63-96)||(13901742-13901775)
chr4 (110-163)||(51622532-51622584)
chr4 (81-181)||(16581711-16581810)
chr4 (70-178)||(18404845-18404952)
chr4 (81-181)||(23377974-23378073)
[»] chr1 (29 HSPs)
chr1 (193-371)||(32907276-32907454)
chr1 (73-181)||(6650605-6650712)
chr1 (67-181)||(9165154-9165267)
chr1 (67-171)||(33700742-33700845)
chr1 (70-172)||(51703786-51703887)
chr1 (74-181)||(8177141-8177247)
chr1 (67-134)||(15786325-15786392)
chr1 (61-181)||(2799860-2799979)
chr1 (70-181)||(10526830-10526940)
chr1 (62-181)||(19940831-19940949)
chr1 (53-134)||(19528332-19528413)
chr1 (62-181)||(952510-952628)
chr1 (67-178)||(36371474-36371584)
chr1 (67-181)||(17745216-17745328)
chr1 (68-181)||(21547439-21547551)
chr1 (67-172)||(51814498-51814602)
chr1 (110-181)||(24019070-24019140)
chr1 (114-181)||(29753700-29753766)
chr1 (67-134)||(46146272-46146339)
chr1 (67-181)||(4566552-4566664)
chr1 (67-181)||(25297776-25297889)
chr1 (67-181)||(40257403-40257516)
chr1 (61-134)||(12259258-12259331)
chr1 (67-116)||(26232409-26232458)
chr1 (67-171)||(8904418-8904521)
chr1 (93-181)||(12587300-12587386)
chr1 (67-127)||(31794276-31794336)
chr1 (70-134)||(52116786-52116850)
chr1 (74-134)||(52336779-52336839)
[»] scaffold0625 (1 HSPs)
scaffold0625 (193-372)||(549-728)
[»] chr7 (31 HSPs)
chr7 (193-372)||(18995928-18996107)
chr7 (193-371)||(28088056-28088225)
chr7 (67-181)||(17040971-17041084)
chr7 (67-181)||(26459369-26459482)
chr7 (67-181)||(39631848-39631961)
chr7 (70-163)||(45709685-45709777)
chr7 (110-181)||(21558175-21558245)
chr7 (67-134)||(43215188-43215255)
chr7 (67-129)||(25021345-25021407)
chr7 (67-134)||(22760867-22760934)
chr7 (70-125)||(36803641-36803696)
chr7 (67-181)||(2446312-2446425)
chr7 (67-181)||(18363700-18363812)
chr7 (67-181)||(30579339-30579452)
chr7 (61-134)||(20335836-20335909)
chr7 (67-131)||(21854552-21854616)
chr7 (110-181)||(9183150-9183220)
chr7 (67-134)||(30442492-30442559)
chr7 (63-134)||(42711958-42712029)
chr7 (70-181)||(43590914-43591024)
chr7 (67-178)||(48771942-48772052)
chr7 (67-133)||(7744118-7744184)
chr7 (67-181)||(15137557-15137670)
chr7 (110-172)||(38374567-38374628)
chr7 (68-134)||(41519269-41519335)
chr7 (69-178)||(19553460-19553567)
chr7 (67-132)||(42836008-42836073)
chr7 (67-163)||(5579211-5579306)
chr7 (63-131)||(23595729-23595797)
chr7 (77-181)||(33222384-33222487)
chr7 (70-122)||(35119390-35119442)
[»] chr5 (23 HSPs)
chr5 (193-355)||(17360614-17360773)
chr5 (69-181)||(22020821-22020932)
chr5 (70-181)||(29692345-29692455)
chr5 (67-181)||(21589292-21589405)
chr5 (67-181)||(22737086-22737199)
chr5 (67-134)||(30883203-30883270)
chr5 (67-181)||(12877697-12877810)
chr5 (67-181)||(16773811-16773924)
chr5 (67-181)||(29075785-29075898)
chr5 (70-179)||(14495766-14495874)
chr5 (92-181)||(30000145-30000233)
chr5 (67-156)||(34984810-34984898)
chr5 (62-134)||(21549142-21549214)
chr5 (67-181)||(25627061-25627173)
chr5 (81-178)||(37258328-37258424)
chr5 (25-57)||(17360775-17360807)
chr5 (63-134)||(16436618-16436688)
chr5 (67-133)||(87429-87495)
chr5 (67-181)||(7918428-7918541)
chr5 (67-169)||(14285165-14285266)
chr5 (67-181)||(16457814-16457927)
chr5 (63-101)||(43241720-43241758)
chr5 (81-181)||(43442214-43442313)
[»] chr3 (31 HSPs)
chr3 (193-356)||(38112367-38112527)
chr3 (67-171)||(4222145-4222248)
chr3 (67-181)||(47454576-47454689)
chr3 (193-351)||(6513346-6513496)
chr3 (67-178)||(28703366-28703476)
chr3 (71-181)||(30311314-30311423)
chr3 (67-163)||(14186652-14186746)
chr3 (63-181)||(2667862-2667979)
chr3 (67-181)||(46518632-46518745)
chr3 (70-179)||(4844472-4844580)
chr3 (70-179)||(4870168-4870276)
chr3 (67-172)||(53412949-53413053)
chr3 (67-178)||(36720385-36720495)
chr3 (110-181)||(44069805-44069875)
chr3 (67-181)||(8051218-8051331)
chr3 (67-181)||(10499068-10499181)
chr3 (92-180)||(44743815-44743902)
chr3 (70-181)||(14339617-14339727)
chr3 (25-56)||(38112333-38112364)
chr3 (67-181)||(40063623-40063737)
chr3 (63-130)||(42465539-42465606)
chr3 (67-133)||(27093367-27093433)
chr3 (67-129)||(28928889-28928951)
chr3 (62-120)||(31788989-31789047)
chr3 (285-354)||(15819297-15819365)
chr3 (84-181)||(51903837-51903933)
chr3 (25-57)||(6513312-6513344)
chr3 (73-133)||(7975428-7975488)
chr3 (67-171)||(15048030-15048133)
chr3 (62-134)||(16354897-16354969)
chr3 (74-130)||(47860767-47860823)
[»] scaffold0258 (1 HSPs)
scaffold0258 (62-181)||(15282-15400)
[»] scaffold0337 (1 HSPs)
scaffold0337 (63-181)||(1753-1870)
[»] chr6 (11 HSPs)
chr6 (63-181)||(24507495-24507612)
chr6 (67-181)||(30127404-30127517)
chr6 (67-178)||(33549108-33549218)
chr6 (67-181)||(12188262-12188375)
chr6 (64-129)||(6776617-6776682)
chr6 (67-181)||(31622950-31623063)
chr6 (63-134)||(10338179-10338250)
chr6 (67-134)||(22564253-22564320)
chr6 (107-178)||(24333987-24334057)
chr6 (67-181)||(1056644-1056757)
chr6 (60-178)||(15951264-15951381)
[»] scaffold0070 (1 HSPs)
scaffold0070 (70-181)||(42480-42589)
[»] chr8 (19 HSPs)
chr8 (67-178)||(968366-968476)
chr8 (67-181)||(2203496-2203609)
chr8 (67-181)||(3624584-3624696)
chr8 (81-179)||(6536538-6536635)
chr8 (67-181)||(16852344-16852457)
chr8 (67-181)||(18540302-18540415)
chr8 (60-134)||(30483889-30483963)
chr8 (74-134)||(35690069-35690129)
chr8 (67-134)||(19703492-19703559)
chr8 (67-181)||(11793480-11793593)
chr8 (61-178)||(20994419-20994536)
chr8 (67-172)||(35641869-35641973)
chr8 (59-134)||(26688861-26688936)
chr8 (67-181)||(28783064-28783177)
chr8 (67-181)||(29858008-29858121)
chr8 (67-133)||(44780120-44780186)
chr8 (67-180)||(8794306-8794417)
chr8 (67-172)||(23361617-23361721)
chr8 (70-134)||(42740501-42740565)
[»] scaffold0122 (1 HSPs)
scaffold0122 (70-134)||(6924-6988)
[»] scaffold0194 (1 HSPs)
scaffold0194 (56-163)||(13023-13129)
[»] scaffold0118 (1 HSPs)
scaffold0118 (67-134)||(41638-41705)
[»] scaffold0002 (1 HSPs)
scaffold0002 (67-134)||(94976-95043)
[»] scaffold0056 (1 HSPs)
scaffold0056 (71-144)||(61643-61716)
[»] scaffold0180 (1 HSPs)
scaffold0180 (74-134)||(19967-20027)
[»] scaffold0047 (1 HSPs)
scaffold0047 (67-178)||(14934-15043)
[»] scaffold1367 (1 HSPs)
scaffold1367 (69-134)||(845-910)
[»] scaffold0299 (1 HSPs)
scaffold0299 (69-134)||(11534-11599)
[»] scaffold0291 (1 HSPs)
scaffold0291 (70-134)||(2475-2539)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 12801220 - 12801596
Alignment:
Q  4 tgcttataaagctttacagagagattcacggaccaactgcccctgcaacaacaa----------gcatcaactcacttgggttggtctagtggtattagc 93  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||| |||||||          ||||||||||||||| ||||| |||||||||||||     
T  12801220 tgcttataaagctttacatacagattcacggaccaactacccctgcgacaacaaaacacaacaagcatcaactcacttgagttggcctagtggtattagt 12801319  T
Q  94 ttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaacnnnnnnnnnn- 192  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||                
T  12801320 ttgggatctgggggtatgctcctcctcaaagtctcaggttc-gactctctccgttaccaatttaggtgggttagtttagtttcttcaaaaaaaaaaaaaa 12801418  T
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||    
T  12801419 gcacagcaaacatcacggctctttcgagtacaacaaactctgactgcagtgaagagacgtctgaaccacgtcaaggcaaatcaacacaacaacataatga 12801518  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaac 371  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  12801519 gtcttatgattcaacagaagcatgacgtatcccctgaagacagccacactgtcttttttagagctct-gtagtatgaac 12801596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 42327467 - 42327363
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||| |||||||||| ||| ||||| |||| ||||||| |||||| ||    
T  42327467 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt-cgattctcttcggtgccaatttgggtgggcta 42327369  T
Q  167 gtttag 172  Q
     |||||    
T  42327368 atttag 42327363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 42602549 - 42602671
Alignment:
Q  58 gcatcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaattta 157  Q
    |||| ||| |||||||||||| ||||||||||| |||||||| | ||| || ||||||| ||||| |||| |||||  || |||||||||| |||||||     
T  42602549 gcataaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtt-tgattctctccggtgccaatttg 42602647  T
Q  158 ggtgggttagtttagtttcttcaa 181  Q
    |||||| || ||||| ||||||||    
T  42602648 ggtgggctaatttagcttcttcaa 42602671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 37480079 - 37480192
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| |||||||| | | | || ||||||||||||| |||||||||| ||| |||| ||||| ||||||| |||||| ||    
T  37480079 cacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggtt-cgattctccccggtcccaatttgggtgggcta 37480177  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  37480178 atttagcttcttcaa 37480192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 4439051 - 4438938
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||| |||||||| ||||||||| | | || ||||||||||||| ||| || ||| ||| ||| || |||||||||||  | ||||||    
T  4439051 cacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctcaaggtcgcatgtt-cgattctttctggtaccaatttgagagggtta 4438953  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  4438952 gtttagcttcttcaa 4438938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 16918650 - 16918537
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| | |||||||| ||| || ||||||||||||| |||| |||||  || |||||| ||| ||| ||| | ||| |||    
T  16918650 cacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggtt-ggattctctctggtgccactttggatggttta 16918552  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  16918551 gtttagcttcttcaa 16918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 21213777 - 21213886
Alignment:
Q  71 tgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagttt 170  Q
    ||||||||||| |||||||| |||||||| | ||| || || |||||||  | |||||||||| ||| |||| ||||| |||||||||||||| ||||||    
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggtt-cgattctccccggtgccaatttaggtgggctagttt 21213875  T
Q  171 agtttcttcaa 181  Q
     | ||||||||    
T  21213876 tgcttcttcaa 21213886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 23465990 - 23465926
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||| ||||||| | || ||||  ||| ||||||||||||||||||||||||||||    
T  23465990 ttgggttggtctaatggtattggtttaggatttgggagtatgctcctcctcaaagtctcaggttc 23465926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 42922418 - 42922529
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaa-gtctcaggttccgactctctccggtaccaatttaggtgggtt 165  Q
    |||||||||||| ||||||||||| |||||| | | ||| || |||||||||||||| |||||||||| ||| |||||| ||| |||||||    |||||    
T  42922418 cacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggtt-cgattctctctggtgccaatttgatggggtt 42922516  T
Q  166 agtttagtttctt 178  Q
    ||||||| |||||    
T  42922517 agtttagcttctt 42922529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 19244108 - 19244222
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtg 161  Q
    |||| |||||||||||||||| |||||||  ||||||| | | | || ||||||||| ||| |||||||||| ||| |||||| ||| |||||||  |||    
T  19244108 caacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggtt-cgattctctctggtgccaatttgagtg 19244206  T
Q  162 ggttagtttagtttct 177  Q
    || || ||||||||||    
T  19244207 ggctaatttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 29503275 - 29503342
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||||||||||| | |||||| | ||| || ||||||||||||| |||||||||||    
T  29503275 cacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttc 29503342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 40416462 - 40416352
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| |||||||||||  ||||| | | ||| ||||||||||||| || |||||||||| ||| |||||| ||| |||||||    ||||||    
T  40416462 cacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggtt-cgattctctctggtgccaatttgaaggggtta 40416364  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  40416363 gtttagattctt 40416352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 5147751 - 5147639
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||||||||||||  |||| |||| ||| |||||||||| ||||| ||||| || | ||| ||||||  | |||||||| |  ||||||    
T  5147751 cacttgggttggtctagtggtattgacttgagatctgggagtatgctccttctcaaggtctc-ggattcgattctctcttgcaccaattt-gaggggtta 5147654  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  5147653 gtttagcttcttcaa 5147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 34041660 - 34041547
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| |||||||||||  ||| ||||| | | || ||||||||||||| ||||||||||  || || ||| ||| |||||||  | ||||||    
T  34041660 cacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtt-tgattccctctggtgccaatttgagggggtta 34041562  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  34041561 gtttagcttcttcaa 34041547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 26545844 - 26545948
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||| | ||||||||||||||||||| ||  || ||||||| ||| | |||||| |||  || ||||| || || ||||||||||||||||    
T  26545844 cacttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgaggtctcaagtt-tgattctcttcgatatcaatttaggtgggtta 26545942  T
Q  167 gtttag 172  Q
     |||||    
T  26545943 atttag 26545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 14500281 - 14500391
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||| |||| |||||||||| |||||| |||| ||| || ||||||||||| | ||||||| || ||| |||||| ||| |||||||  | ||| ||    
T  14500281 cacttggtttggcctagtggtataagcttgagatctgggagtgtgctcctcctctaggtctcagatt-cgattctctctggtgccaatttgagggggata 14500379  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  14500380 gtttagcttctt 14500391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 30808719 - 30808625
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgg 162  Q
    ||||||||||||||| ||| |||| ||||| || | | |  ||||||||||||||| |||||| ||| ||| ||||| ||||||||| ||||||||    
T  30808719 cacttgggttggtctggtgatattggcttgagacctgagaatatgctcctcctcaaggtctca-gtttcgattctcttcggtaccaacttaggtgg 30808625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 37971942 - 37972008
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttct 177  Q
    |||||||  |||||||||||||||| || |||||||||| |||||||||||||| || ||||| ||||    
T  37971942 tgctccttgtcaaagtctcaggttc-gattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 39714996 - 39715100
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  | ||||||||  ||||||| | ||| || ||||||||||| | |||||||||| ||| |||| || | ||||||||||||||| ||    
T  39714996 cacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctccccagcaccaatttaggtgggcta 39715094  T
Q  167 gtttag 172  Q
     |||||    
T  39715095 atttag 39715100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 2750684 - 2750585
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttca 180  Q
    ||||||||| ||||||| ||||||  || ||||| ||||||| |||||| |||| || ||||||  || |||||||  | |||||||||||| |||||||    
T  2750684 tagtggtataagcttggaatccggtagtgtgctcttcctcaaggtctcatgttc-gattctctctagtgccaatttgagggggttagtttagcttcttca 2750586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 4159617 - 4159534
Alignment:
Q  197 agcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaa 281  Q
    |||||||||||| || || ||||| | |||||| |||||| ||| ||||||||||| | |||||| || |||| |||||||||||    
T  4159617 agcaagcatcacagccctctcgagcataacaaactctgac-gcaatgaagagacatttgaaccacatccaggcgaatcaacacaa 4159534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 12086194 - 12086091
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagt 173  Q
    ||||| || |||||||| |||||||| | ||  || ||||||||||||| ||||| |||| ||| || ||||||| | |||||||||||| || |||||     
T  12086194 gttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggtt-cgattccctccggtgctaatttaggtgggctaatttagc 12086096  T
Q  174 ttctt 178  Q
    |||||    
T  12086095 ttctt 12086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 41202257 - 41202321
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||||||||  | || |||| ||| |||||||||||||| |||||| ||||||    
T  41202257 ttgggttggtctggtggtattgacctgagatctgggagtatgctcctcctcgaagtcttaggttc 41202321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 193 - 371
Target Start/End: Complemental strand, 13434448 - 13434270
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||| | | ||||| |||| || || |||||    
T  13434448 gcacaacaagcattacggctctttcgagcacaacaaactctgactgcagtgacgagacatctgaaccacgtcaggacgaatcagcacagcagcacaacga 13434349  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaac 371  Q
    ||||||||| |||||||||||||||| | |||||||||| ||  |||||||||||||||||||||| ||||| ||||||    
T  13434348 gtcttatgaatcaacagaagcatggcatgtcccctgaaggcagccacactgtcttttttagagctccggtagcatgaac 13434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 370
Target Start/End: Original strand, 8016664 - 8016841
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||||||||| | |||||| |||||||| ||| |||||| |||| |||||||| |||||| ||||| | |||   |||| |||||||||||    
T  8016664 gcacaacaagcatcacggccccttcgagcacaacaaactcttactgcattgaaaagacatctgaaccacatcaagacgaattcgcacatcaacataacga 8016763  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaa 370  Q
    || ||||||||||||| ||||| || || ||||||||||| |  |||| ||||||||||||||||| ||||| |||||    
T  8016764 gttttatgattcaacaaaagcaaggtgtgtcccctgaagatagccacattgtcttttttagagctccggtagcatgaa 8016841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 37109423 - 37109310
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||| |||||||||| ||| |||||| ||| |||||||  | ||||||    
T  37109423 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgccaatttgagggggtta 37109325  T
Q  167 gtttagtttcttcaa 181  Q
    |||||||||||||||    
T  37109324 gtttagtttcttcaa 37109310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 7292870 - 7292757
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||||||||||||| |||||| | | ||| || |||||||||||||||||||||||| ||| ||||||  || |||||||  | ||||||    
T  7292870 cacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggtt-cgattctctctagtgccaatttgagggggtta 7292772  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  7292771 gtttagcttcttcaa 7292757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 38869785 - 38869886
Alignment:
Q  80 ctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttc 179  Q
    ||||||||||| |||||||||| ||| || ||||||||||||| |||||||||| ||| || ||| ||| |||||||  | |||||||||||| ||||||    
T  38869785 ctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggtt-cgattccctctggtgccaatttgagggggttagtttagcttcttc 38869883  T
Q  180 aac 182  Q
    |||    
T  38869884 aac 38869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 30938281 - 30938178
Alignment:
Q  77 ggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttc 176  Q
    |||||||||||||| | ||||||||  || || ||||||||||| | ||||||||||| || |||| ||  | ||||||||||||||||||||||| |||    
T  30938281 ggtctagtggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttc-gattctccccaatgccaatttaggtgggttagtttagcttc 30938183  T
Q  177 ttcaa 181  Q
    |||||    
T  30938182 ttcaa 30938178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 2732043 - 2732109
Alignment:
Q  112 ctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttc 179  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||| |||||| |||||||| ||||||    
T  2732043 ctcctcctcaaagtctcaggtt-cgattctctccggtgccaatttgggtgggctagtttagcttcttc 2732109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 7949526 - 7949413
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||| ||| |||| |||||| |||||||| |  || || ||||||||||||| |||||||||| ||| |||||| |||  ||||||||||||| ||    
T  7949526 cacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgtcaatttaggtgggcta 7949428  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  7949427 atttagcttcttcaa 7949413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 39509069 - 39509178
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtg 161  Q
    |||| |||||||||||||||  ||||| | |||||||||| ||| || ||||||||||| | |||||||||| ||| |||| || ||  |||||||||||    
T  39509069 caacccacttgggttggtctcatggtaatggcttgggatctgggagtgtgctcctcctcgaggtctcaggtt-cgattctccccagtggcaatttaggtg 39509167  T
Q  162 ggttagtttag 172  Q
    ||||| |||||    
T  39509168 ggttaatttag 39509178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 51250594 - 51250484
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| |||||||||| ||| || |||||| ||||||  ||||| ||| ||| || ||||||| ||||||| |||||| ||    
T  51250594 cacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagtt-cgattccctccggtgccaatttgggtgggcta 51250496  T
Q  167 gtttagtttctt 178  Q
     ||||| |||||    
T  51250495 atttagcttctt 51250484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 2185099 - 2184994
Alignment:
Q  72 gggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagttta 171  Q
    ||||||| ||||||||| | |||||| | | ||| || ||||||| |||||||||||||||| ||| |||||||| | |||||||  | |||||||||||    
T  2185099 gggttggcctagtggtaatggcttggaacctgggagtgtgctccttctcaaagtctcaggtt-cgattctctccgatgccaatttgagggggttagttta 2185001  T
Q  172 gtttctt 178  Q
    | |||||    
T  2185000 gcttctt 2184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 31759730 - 31759617
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||| |||||||||||| ||||||||   ||| || ||||||||||||| ||||||| || ||| ||| || |||||||||||    || |||    
T  31759730 cacttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctcagatt-cgattctttctggtaccaatttgaagggatta 31759632  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  31759631 gtttagcttcttcaa 31759617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 43623517 - 43623412
Alignment:
Q  66 tcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtt 165  Q
    ||||||||||| |||||||| ||||  |||| |||| ||| || ||||||||||  |||||||||||| ||| |||||   ||| ||||||||||||| |    
T  43623517 tcacttgggttagtctagtgatattgacttgagatcagggagtgtgctcctccttgaagtctcaggtt-cgattctctatagtagcaatttaggtgggct 43623419  T
Q  166 agtttag 172  Q
    |||||||    
T  43623418 agtttag 43623412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 4911309 - 4911272
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttggga 99  Q
    |||||||||||||||||||| |||||||||||||||||    
T  4911309 caactcacttgggttggtctggtggtattagcttggga 4911272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 19238649 - 19238545
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| ||||||||   ||| || ||||||||||| | ||||| |||| ||| |||| ||||||||||||| |||||| ||    
T  19238649 cacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggtt-cgattctccccggtaccaatttgggtgggcta 19238551  T
Q  167 gtttag 172  Q
     |||||    
T  19238550 atttag 19238545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 4249175 - 4249294
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggt 160  Q
    ||||| ||||| | |||| ||||||||||  |||||||||   || || ||||||||||||| ||||||||||  || |||||| ||| |||||||  |     
T  4249175 tcaacccacttcgcttggcctagtggtataggcttgggattttggagtgtgctcctcctcaaggtctcaggtt-tgattctctctggtgccaatttgagg 4249273  T
Q  161 gggttagtttagtttcttcaa 181  Q
    |||||||||||| ||||||||    
T  4249274 gggttagtttagcttcttcaa 4249294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 13015444 - 13015535
Alignment:
Q  80 ctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttag 172  Q
    ||||||||||| ||||||||   ||| || ||||||||||| |||||||| ||| ||| |||||| |||  |||||||||||||||| |||||    
T  13015444 ctagtggtattggcttgggacttgggagtgtgctcctcctcgaagtctcatgtt-cgattctctcaggtgtcaatttaggtgggttaatttag 13015535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 46295144 - 46295211
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttctt 178  Q
    ||||||||||||| |||||||||| ||| |||| ||||| ||||||| |||||| |||||||| |||||    
T  46295144 tgctcctcctcaaggtctcaggtt-cgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 2622476 - 2622377
Alignment:
Q  62 caactcacttgggttggtctagtggtatta----gcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaattta 157  Q
    |||| |||||||||||| ||||||||||||    |||||||| | ||| || ||||||||||| | |||||||||| ||| |||||| ||| ||||||||    
T  2622476 caacccacttgggttggcctagtggtattaattggcttgggacctgggagtgtgctcctcctccatgtctcaggtt-cgattctctctggtgccaattta 2622378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 19680860 - 19680750
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||| |||| ||||||||||| ||||||||   ||| || ||||| ||||||| |||| ||||| ||| |||||| ||| |||||||| |  |||||    
T  19680860 cacttggattggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtcttaggtt-cgattctctctggtgccaatttaaggaggtta 19680762  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  19680761 gtttagcttctt 19680750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 37274532 - 37274418
Alignment:
Q  67 cacttgggttggtctagtggta-ttagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtt 165  Q
    |||||||||||| ||||| ||| || |||||||| | ||| || ||||||||||||| |||| ||||| ||| |||||| ||| | |||||| ||||| |    
T  37274532 cacttgggttggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaaggtcttaggtt-cgattctctctggtgctaatttaagtgggct 37274434  T
Q  166 agtttagtttcttcaa 181  Q
    | ||||| ||||||||    
T  37274433 aatttagcttcttcaa 37274418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 41347035 - 41346968
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||  ||||||| | ||| |||| ||| |||||||||||||| |||||||||||||    
T  41347035 cacttgggttggcctgatggtattggtttgagatctgggagtatgctcctcctcgaagtctcaggttc 41346968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 43728395 - 43728466
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||| |||||||||| | ||||||||  |||  |||| ||| || |||||||||||||||||||||||||    
T  43728395 aactcatttgggttggtatggtggtattgacttatgatctgggagtgtgctcctcctcaaagtctcaggttc 43728466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 55427278 - 55427168
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggt 160  Q
    ||||| |||||||||||| || |||||||| |||||||| | ||| || ||||||| ||| | |||||||||| ||| ||||  |||| ||||||| |||    
T  55427278 tcaacccacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggtt-cgattctccgcggtgccaatttgggt 55427180  T
Q  161 gggttagtttag 172  Q
    ||| || |||||    
T  55427179 gggctaatttag 55427168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 37720286 - 37720173
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || ||| |||| |||||||| | ||| || ||| ||||||||| ||| |||||| ||| |||| | || | ||||||||||||| ||    
T  37720286 cacttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggtt-cgattctcccagggatcaatttaggtgggcta 37720188  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  37720187 atttagcttcttcaa 37720173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 38838841 - 38838914
Alignment:
Q  107 gtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    |||||||||||||||| |||| ||||| ||| |||||||| |  |||||| |||||| || ||||||||||||||    
T  38838841 gtatgctcctcctcaaggtcttaggtt-cgattctctccgatggcaatttcggtgggctaatttagtttcttcaa 38838914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 13901742 - 13901775
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttg 96  Q
    |||||||||||||||||||||||||||| |||||    
T  13901742 aactcacttgggttggtctagtggtattggcttg 13901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 51622532 - 51622584
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtggg 163  Q
    ||||||||||||| |||||||||| |||||||||| ||| ||||||| ||||||    
T  51622532 tgctcctcctcaaggtctcaggtt-cgactctctctggtgccaatttgggtggg 51622584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 16581711 - 16581810
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttca 180  Q
    |||||||||| |||||| | | ||| || ||||||||||||| |||||||||| | | | |||| ||| |||||||  | |||||||||||| |||||||    
T  16581711 tagtggtattggcttggaacctgggagtctgctcctcctcaaggtctcaggtt-ctattatctctggtgccaatttgagagggttagtttagcttcttca 16581809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 18404952 - 18404845
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||||||||| ||||||||||  ||||||||  |||  ||| |||||| |||| ||||||||||| || | |||  |||  ||||||| |||||||||||    
T  18404952 ttgggttggtttagtggtattgacttgggatttgggaatatactcctcatcaatgtctcaggttc-gattatctaaggtgtcaatttaagtgggttagtt 18404854  T
Q  170 tagtttctt 178  Q
    ||| |||||    
T  18404853 tagcttctt 18404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 23377974 - 23378073
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttca 180  Q
    ||||| |||| |||||||| | ||| || ||||||||||||| |||||||||| ||| ||||||  || |||||||  | ||| |||||||| |||||||    
T  23377974 tagtgttattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctagtgccaatttgagggggctagtttagcttcttca 23378072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 193 - 371
Target Start/End: Complemental strand, 32907454 - 32907276
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||| |||||||||||||| |||||||| | |||||  ||||| ||||||||| |||||||||||| | ||||| |||| || || |||||    
T  32907454 gcacaacaagcattacggctctttcgagcacaacaaactttgactatagtgacgagacatctgaaccacgtcaagacgaatcagcacagcagcacaacga 32907355  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaac 371  Q
    |||||||||||||||| ||||||||||| |||||||||| ||  |||||||||||||||||||||| ||||| ||||||    
T  32907354 gtcttatgattcaacaaaagcatggcgtgtcccctgaagtcagccacactgtcttttttagagctccggtagcatgaac 32907276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 6650605 - 6650712
Alignment:
Q  73 ggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttag 172  Q
    |||||| ||||||||||| |||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| |||  |||||||||||| |||||||||    
T  6650605 ggttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggtt-cgattctctctggtgtcaatttaggtggattagtttag 6650703  T
Q  173 tttcttcaa 181  Q
     ||||||||    
T  6650704 cttcttcaa 6650712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 9165267 - 9165154
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || |||||||||||||||||||||||| | | |||||| ||| |||||||  | ||||||    
T  9165267 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggtt-caattctctctggtgccaatttgagggggtta 9165169  T
Q  167 gtttagtttcttcaa 181  Q
     ||||||||||||||    
T  9165168 ctttagtttcttcaa 9165154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 33700845 - 33700742
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||| ||| ||| || ||||||||||||| |||||||||| ||| |||||| ||| |||||||| | ||||||    
T  33700845 cacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgccaatttaagggggtta 33700747  T
Q  167 gttta 171  Q
    |||||    
T  33700746 gttta 33700742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 51703786 - 51703887
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    ||||||||||||||||||||| |||||| ||| ||| || |||||||||||||||| ||||||| ||| |||||| |||| ||||||| |  ||||||||    
T  51703786 ttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaaagtttcaggtt-cgattctctctggtatcaatttaagacggttagtt 51703884  T
Q  170 tag 172  Q
    |||    
T  51703885 tag 51703887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 8177247 - 8177141
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagt 173  Q
    ||||| ||||||||||| |||||||||| ||| || ||||||||||||| || ||||||| ||| |||||| ||| |||||||  | ||||||||||||     
T  8177247 gttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtt-cgattctctctggtgccaatttgagggggttagtttagc 8177149  T
Q  174 ttcttcaa 181  Q
    ||||||||    
T  8177148 ttcttcaa 8177141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 15786392 - 15786325
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||||||||| ||||| |||||||||| ||| || ||||||||||||| |||||||||||    
T  15786392 cacttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 15786325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 2799860 - 2799979
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggt 160  Q
    ||||| ||||| | |||| ||||||||||  ||||| |||| ||| || ||||||||||||| |||||||||| ||| |||||| ||| |||||||  |     
T  2799860 tcaacccacttcgcttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgccaatttgagg 2799958  T
Q  161 gggttagtttagtttcttcaa 181  Q
    |||||||||||| ||||||||    
T  2799959 gggttagtttagcttcttcaa 2799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 10526830 - 10526940
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    ||||||||||| ||||||||| |||||||| | ||| || ||||||||||||| ||||||| || ||| |||||| ||   |||||| ||||||||| ||    
T  10526830 ttgggttggtccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctcagatt-cgattctctctggagtcaatttgggtgggttaatt 10526928  T
Q  170 tagtttcttcaa 181  Q
    ||| ||||||||    
T  10526929 tagcttcttcaa 10526940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 19940949 - 19940831
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtg 161  Q
    |||| ||||||||||||||| ||||| ||||||||||  |  || || |||||||||| || ||||||||||  || |||||||||| |||||||| |||    
T  19940949 caacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtt-tgattctctccggtgccaatttatgtg 19940851  T
Q  162 ggttagtttagtttcttcaa 181  Q
    || | |||||| ||||||||    
T  19940850 ggctggtttagcttcttcaa 19940831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 19528413 - 19528332
Alignment:
Q  53 aacaagcatcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||| |||||| |||||||||||| || |||||||| ||||||||||   | || ||||||||||||| |||||||||||    
T  19528413 aacaagaatcaacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttc 19528332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 952510 - 952628
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtg 161  Q
    |||| |||||| |||||||| ||||| || |||||||| | ||| || ||||| ||||||||||||||||||  || |||| ||| |  |||||||||||    
T  952510 caacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgctcatcctcaaagtctcaggtt-agattctccccgatgtcaatttaggtg 952608  T
Q  162 ggttagtttagtttcttcaa 181  Q
    ||||| ||||| ||| ||||    
T  952609 ggttaatttagcttcgtcaa 952628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 36371474 - 36371584
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||| | | ||| || ||||||||||||| |||| ||||| ||| |||||| | | |||||||  | ||||||    
T  36371474 cacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggtt-cgattctctctgatgccaatttgagggggtta 36371572  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  36371573 gtttagcttctt 36371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 17745328 - 17745216
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | | | || ||||||||||| | |||||| ||| ||| |||||| |||  |||||||||| |||||    
T  17745328 cacttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgtt-cgattctctctggtgtcaatttaggt-ggtta 17745231  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  17745230 atttagcttcttcaa 17745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 21547551 - 21547439
Alignment:
Q  68 acttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttag 167  Q
    ||||||||||| ||||||||||| ||||||||   ||| |  ||||||||||| | || ||||||| ||| |||||| | | |||||||||||||| |||    
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggtt-cgattctctctgatgccaatttaggtgggctag 21547453  T
Q  168 tttagtttcttcaa 181  Q
    ||||  ||||||||    
T  21547452 tttaacttcttcaa 21547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 51814498 - 51814602
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||  |||||||  |||| |||| | | || ||||||||||||| |||||||||| ||| |||||||||| ||||||| |||||| ||    
T  51814498 cacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggtt-cgattctctccggtgccaatttgggtgggcta 51814596  T
Q  167 gtttag 172  Q
     |||||    
T  51814597 atttag 51814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 24019070 - 24019140
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||||||||| |||| |||||| || ||||  |||||||||||| |||||| |||||||| ||||||||    
T  24019070 tgctcctcctcaaggtcttaggttc-gattctcctcggtaccaatttcggtgggctagtttagcttcttcaa 24019140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 29753700 - 29753766
Alignment:
Q  114 cctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||||| ||||||||||| || |||||| ||| |||||||| | |||||||||||| ||||||||    
T  29753700 cctcctcaaggtctcaggttc-gattctctctggtgccaatttaagagggttagtttagcttcttcaa 29753766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 46146339 - 46146272
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||||   |||||||||||||||||| |||  | |||||| | ||||||||||||||||    
T  46146339 cacttgggttggtccgatggtattagcttgggatctgggaatgtgctccccttcaaagtctcaggttc 46146272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 4566552 - 4566664
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| |||||| |||| |||||| | | ||| || ||||||||||||  |||||||||| ||| |||||| | |  ||||||| | ||||||    
T  4566552 cacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggtt-cgattctctctgatgtcaatttaag-gggtta 4566649  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  4566650 gtttagcttcttcaa 4566664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 25297776 - 25297889
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||||||||||||  ||| ||||| | | || ||||||||||| | |||| |||||  || |||| ||||   ||||||||||||| ||    
T  25297776 cacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtt-tgattctcaccggcgtcaatttaggtgggata 25297874  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  25297875 atttagcttcttcaa 25297889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 40257403 - 40257516
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| ||||| || | ||| || ||||||||||| | |||||| ||| | | ||| ||||||  |||||| |||||| ||    
T  40257403 cacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagtt-caattctatccggtgtcaatttgggtgggcta 40257501  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  40257502 gtttagcttcttcaa 40257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 12259258 - 12259331
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||| ||||||||||||  ||||| ||||| ||||||||  ||| || ||||||||||| |||||||| ||||    
T  12259258 tcaacccacttgggttggcatagtgatattaacttgggatttgggagtgtgctcctcctcgaagtctcaagttc 12259331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 26232458 - 26232409
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcct 116  Q
    |||||||||||||||||||||||| ||||| |||| ||| || |||||||    
T  26232458 cacttgggttggtctagtggtattggcttgagatctgggagtgtgctcct 26232409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 8904418 - 8904521
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||| |||||  ||||||||  | | || ||||||||||||| |||||| ||| ||| |||||| ||| |||||||  | ||||||    
T  8904418 cacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaagtt-cgattctctctggtgccaatttgagggggtta 8904516  T
Q  167 gttta 171  Q
    |||||    
T  8904517 gttta 8904521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 12587300 - 12587386
Alignment:
Q  93 cttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||||| | | || ||||||||||| | ||||||||||| || |||||||||| | |||||||||||| || ||||| ||||||||    
T  12587300 cttgggatctgtgagtgtgctcctcctcgaggtctcaggttc-gattctctccggtgc-aatttaggtgggctaatttagcttcttcaa 12587386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 31794336 - 31794276
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtct 127  Q
    |||||||||||| ||||||||||| ||||||||   ||| || ||||||||||||| ||||    
T  31794336 cacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31794276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 52116850 - 52116786
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||| || |||||||| ||||||||   ||| || ||||||||||||| |||||||||||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttc 52116786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 52336839 - 52336779
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||| ||||||||||| |||||||||| ||| || |||||||||| ||  ||||||||||    
T  52336839 gttggcctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttc 52336779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 193 - 372
Target Start/End: Complemental strand, 728 - 549
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||||||| | |||||||| || ||||| ||| ||  |||||||||||||||| |||||||| ||| | ||||| ||||||| ||||||||    
T  728 gcacaacaagcatcacgaccctttcgagcacgacaaactctaacgacagtgaagagacatctgaaccacgttaagacgaatcagcacaacagcataacga 629  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaact 372  Q
    |||||||||||||||| ||||||||| | |||||||||| ||  |||||||||||||||||| |  |||||| |||||||    
T  628 gtcttatgattcaacaaaagcatggcatgtcccctgaaggcagccacactgtcttttttagaaccgtggtagcatgaact 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 18995928 - 18996107
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||||||| | |||||||| || ||||| ||| ||  |||||||||||||||| |||||||| ||| | ||||| ||||||| ||||||||    
T  18995928 gcacaacaagcatcacgaccctttcgagcacgacaaactctaacgacagtgaagagacatctgaaccacgttaagacgaatcagcacaacagcataacga 18996027  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaact 372  Q
    |||||||||||||||| ||||||||| | |||||||||| ||  |||||||||||||||||| |  |||||| |||||||    
T  18996028 gtcttatgattcaacaaaagcatggcatgtcccctgaaggcagccacactgtcttttttagaaccgtggtagcatgaact 18996107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 371
Target Start/End: Original strand, 28088056 - 28088225
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||| |||||||||||||| |||||||| |||||||| ||||| |||| |||| |||||||||||| ||||||| |||        || ||    
T  28088056 gcacaacaagcattacggctctttcgagcacaacaaactctgactgtagtgacgagaaatctgaaccacgtcaagacaaatcagcac--------aatga 28088147  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagctctggtagtatgaac 371  Q
    |||||||||||||||| ||||||| | | |||||||||| ||  |||| |||| |||||||||||| ||||| ||||||    
T  28088148 gtcttatgattcaacaaaagcatgacatgtcccctgaaggcagccacattgtc-tttttagagctccggtagcatgaac 28088225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 17041084 - 17040971
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||||||||| ||| |||||||||| ||  || ||||||||||||| |||||||||| ||| ||||||  || ||||||| ||||||| |    
T  17041084 cacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggtt-cgattctctcaagtgccaatttgggtgggtca 17040986  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  17040985 atttagcttcttcaa 17040971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 26459482 - 26459369
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||| |||||||||| ||| |||||| ||| |||||||    ||||||    
T  26459482 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgccaatttgaaggggtta 26459384  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  26459383 gtttagcttcttcaa 26459369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 39631848 - 39631961
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| ||| |||||||||||| |||||||||| ||| ||||||  || |||||||  | ||||||    
T  39631848 cacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggtt-cgattctctcttgtgccaatttgagggggtta 39631946  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  39631947 gtttagcttcttcaa 39631961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 45709777 - 45709685
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtggg 163  Q
    ||||||||| |||||||||||||||||||||| | | || ||||||||||| | |||||||||| ||| | |||||| ||||||||||||||||    
T  45709777 ttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctcaggtt-cgattatctccgataccaatttaggtggg 45709685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 21558175 - 21558245
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||||||||| ||||||||||| || |||||| ||| ||||||||||||||||| ||||| ||||||||    
T  21558175 tgctcctcctcaaggtctcaggttc-gattctctctggtgccaatttaggtgggttaatttagcttcttcaa 21558245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 43215188 - 43215255
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||||||||||||||| |||||||| |  || || ||||||||||||| |||||||||||    
T  43215188 cacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttc 43215255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 25021407 - 25021345
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctca 129  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||||||||||    
T  25021407 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctca 25021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 22760867 - 22760934
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||||| ||||||||  ||||||| | ||| || ||||||||||||| |||||||||||    
T  22760867 cacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttc 22760934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 36803696 - 36803641
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagt 125  Q
    |||||||||||||||||||||  ||||||| | ||| |||||||||||||||||||    
T  36803696 ttgggttggtctagtggtattgacttgggacctgggagtatgctcctcctcaaagt 36803641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 2446312 - 2446425
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||||  ||||||| ||||||||   ||| || ||||||||||| |  ||||| |||| || |||||||||| || ||||||||||| ||    
T  2446312 cacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagttc-gattctctccggtgccgatttaggtgggcta 2446410  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  2446411 atttagcttcttcaa 2446425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 18363700 - 18363812
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||  ||||| |||  ||| || ||||||||||||| ||||||||||  || ||||||  |||||||||| |  ||||||    
T  18363700 cacttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtt-tgattctctctagtaccaattt-gaggggtta 18363797  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  18363798 gtttagcttcttcaa 18363812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 30579339 - 30579452
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| ||||| || | ||| || | | ||||||||| |||||||||| ||| | |||| ||| |||||||||||||| ||    
T  30579339 cacttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggtt-cgattttctctggtgccaatttaggtgggcta 30579437  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  30579438 atttagcttcttcaa 30579452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 20335909 - 20335836
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||| ||||||||||||||||| |||||| ||||||||   ||| || ||||||||||| | |||||||||||    
T  20335909 tcaacccacttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttc 20335836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 21854552 - 21854616
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcagg 131  Q
    |||||||||||| ||  ||||||| ||| |||||| ||| || ||||||||||||||||||||||    
T  21854552 cacttgggttggcctgatggtattggctagggatctgggagtgtgctcctcctcaaagtctcagg 21854616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 9183220 - 9183150
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    |||||||||||||||||||||||| ||| | |||| |||  |||||| |||||| || ||||||||||||||    
T  9183220 tgctcctcctcaaagtctcaggtt-cgattatctctggtgtcaatttgggtgggctaatttagtttcttcaa 9183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 30442492 - 30442559
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| | ||||||||| |||||||| | ||| || ||||||||||||| |||| ||||||    
T  30442492 cacttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttc 30442559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 42711958 - 42712029
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||||||  ||||||||||||||||| |   ||| || ||||||||||||| |||||| ||||    
T  42711958 aactcacttgggttggcttagtggtattagcttggtacatgggagtgtgctcctcctcaaggtctcatgttc 42712029  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 43590914 - 43591024
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    ||||||||| || |||||||| ||||||||   ||| || ||||||||||||| |||||||||| ||| |||| |  || |||||| ||||||| || ||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggtt-cgattctccctagtgccaattaaggtgggctaatt 43591012  T
Q  170 tagtttcttcaa 181  Q
    ||| ||||||||    
T  43591013 tagcttcttcaa 43591024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 48771942 - 48772052
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  | |||||||| |||||||||| ||| || ||||||||||  | ||||||||||| || | || |  ||||||||||||||||| ||    
T  48771942 cacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttc-gattatcccaagtaccaatttaggtgggcta 48772040  T
Q  167 gtttagtttctt 178  Q
     ||||| |||||    
T  48772041 atttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 7744184 - 7744118
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggtt 133  Q
    ||||| |||||| ||||||||||  |||| ||||| |||  ||||||||||||||| ||||||||||    
T  7744184 cacttaggttggcctagtggtataggcttaggatctgggactatgctcctcctcaaggtctcaggtt 7744118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 15137557 - 15137670
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||| |  ||||||||   || || ||||||||||||| ||||||||||  || |||||| |||  |||||| |||||| ||    
T  15137557 cacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggtt-agattctctctggtgtcaatttgggtgggcta 15137655  T
Q  167 gtttagtttcttcaa 181  Q
     ||||||||||||||    
T  15137656 atttagtttcttcaa 15137670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 38374628 - 38374567
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttag 172  Q
    ||||||||||||| |||| |||||| || |||| ||||| |||||||||||||| ||||||||    
T  38374628 tgctcctcctcaaggtcttaggttc-gattctccccggtgccaatttaggtgggctagtttag 38374567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 41519335 - 41519269
Alignment:
Q  68 acttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||| |||||||||||  ||||||||   || || ||||||||||||| |||||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttc 41519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 19553460 - 19553567
Alignment:
Q  69 cttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagt 168  Q
    |||||||||| || |||||||| |||||| | | ||| || ||||||||||||| |||| ||||||  | |||| ||||| |||||||||||||| || |    
T  19553460 cttgggttggcctggtggtattggcttgg-acctgggagtgtgctcctcctcaaggtcttaggttca-attctccccggttccaatttaggtgggctact 19553557  T
Q  169 ttagtttctt 178  Q
    |||| |||||    
T  19553558 ttagcttctt 19553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 42836073 - 42836008
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggt 132  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||| ||||||| | |||||||    
T  42836073 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcttcctcaaggcctcaggt 42836008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 5579306 - 5579211
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtggg 163  Q
    |||||||||||  || ||||| || |||||||| |  || || ||||||||||||| ||||||||||  ||||||| ||||| ||||||| ||||||    
T  5579306 cacttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtt-tgactctccccggtgccaatttgggtggg 5579211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 23595729 - 23595797
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcagg 131  Q
    ||||||||||||||||||| ||||||||  |||| ||||  || || ||||||||||||| || |||||    
T  23595729 aactcacttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctcaaggtatcagg 23595797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 33222384 - 33222487
Alignment:
Q  77 ggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttc 176  Q
    |||||||||||||| |||||||| | ||  || | ||| ||||||| |||||||||| ||| |||||| |||  ||||||  | |||||||||||| |||    
T  33222384 ggtctagtggtattggcttgggacctggaagtgtactcatcctcaaggtctcaggtt-cgattctctctggtgtcaatttgagagggttagtttagattc 33222482  T
Q  177 ttcaa 181  Q
    |||||    
T  33222483 ttcaa 33222487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35119390 - 35119442
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaa 122  Q
    ||||||||| |||||||||||  ||||||||| ||| |||||||| |||||||    
T  35119390 ttgggttggcctagtggtattgacttgggatctgggtgtatgctcatcctcaa 35119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 355
Target Start/End: Complemental strand, 17360773 - 17360614
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||| |||||||||| | | |||   || | || ||||||||    
T  17360773 gcacatcaagcatcacggccctttcgagcacaacaaactcttactgcagtgaagagacatctgaaccacgtcaggacgaat---catagcatcataacga 17360677  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagag 355  Q
    ||||||||||||||||||| ||||| || |||||||||| ||  |||||||||||||||||||    
T  17360676 gtcttatgattcaacagaaccatggtgtgtcccctgaaggcagccacactgtcttttttagag 17360614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 22020932 - 22020821
Alignment:
Q  69 cttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagt 168  Q
    ||||||||||  ||||||||||||||||||||| ||| || ||||||||||  ||||||||| || ||| ||||||| ||   |||||||||||| || |    
T  22020932 cttgggttggcatagtggtattagcttgggatctgggagtgtgctcctccttgaagtctcagatt-cgattctctccagtgttaatttaggtgggctaat 22020834  T
Q  169 ttagtttcttcaa 181  Q
    |||||||||||||    
T  22020833 ttagtttcttcaa 22020821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 29692455 - 29692345
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||||||||||| |||||||| | |||||||| ||| || ||||||||||||||||||||||||   | |||||||| | ||||||| |||||  || ||    
T  29692455 ttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctcaaagtctcaggtt-taattctctccgatgccaatttgggtggactaatt 29692357  T
Q  170 tagtttcttcaa 181  Q
    ||||||||||||    
T  29692356 tagtttcttcaa 29692345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 21589292 - 21589405
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| |||||||| | ||| || |||| |||||| | |||||||||| ||| || ||| ||| |||||||||||||| ||    
T  21589292 cacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggtt-cgattccctctggtgccaatttaggtgggcta 21589390  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  21589391 gtttagcttcttcaa 21589405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 22737086 - 22737199
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||||||||||||| ||||||||   ||  || ||||||||| ||| |||||||||| ||| || ||| | || ||||||||||||||||    
T  22737086 cacttgggttggtctagtggtattggcttgggacttggaagtgtgctcctccccaatgtctcaggtt-cgattccctctgatatcaatttaggtgggtta 22737184  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  22737185 atttagcttcttcaa 22737199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 30883270 - 30883203
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||||||||||||||| |||||||| | ||| || ||||||||||||| |||||| ||||    
T  30883270 cacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttc 30883203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 12877697 - 12877810
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||| ||||||||||||| ||| | |||||||  ||| || || | |||||||| |||||||||| ||| |||||| ||||| |||||||||||| ||    
T  12877697 cacttgagttggtctagtggcattggtttgggatttgggagtgtgtttctcctcaatgtctcaggtt-cgattctctctggtactaatttaggtgggcta 12877795  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  12877796 atttagcttcttcaa 12877810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 16773811 - 16773924
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||| |||||||| ||||||||  ||||||| | ||| || ||||||||||| | |||||||||| ||| |||||| | | |||||||||||||| ||    
T  16773811 cacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctctctgatgccaatttaggtgggcta 16773909  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  16773910 atttagcttcttcaa 16773924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 29075785 - 29075898
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||| | ||||||||||| |||||||||| ||| || ||||||||||| |  ||||| ||| ||| |||||| ||| ||||||||| |||| ||    
T  29075785 cacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgtt-cgattctctctggtgccaatttagatgggcta 29075883  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  29075884 atttagcttcttcaa 29075898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 14495874 - 14495766
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||||||||||| ||||||||  ||||||||| ||| || ||||||||||| | ||||||| ||  || |||||||| | ||||||||| |||| |||||    
T  14495874 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatt-tgattctctccgatgccaatttagatgggctagtt 14495776  T
Q  170 tagtttcttc 179  Q
    ||| ||||||    
T  14495775 tagcttcttc 14495766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 30000145 - 30000233
Alignment:
Q  92 gcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    |||||||||||||| |||||| ||||||| | |||||||||| |||||||||| | | |||||||| |||||||| ||||  ||||||||    
T  30000145 gcttgggatccgggagtatgcacctcctcgaggtctcaggtt-cgactctctctgatgccaatttaagtgggttaatttaacttcttcaa 30000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 34984810 - 34984898
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaattt 156  Q
    |||||||||||||||||||||||| |||||| | | ||| || ||||||||||||| |||| ||||| ||| |||||| ||| |||||||    
T  34984810 cacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggtt-cgattctctctggtgccaattt 34984898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 21549214 - 21549142
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||| |||||||||||| ||||||||||| |||||||| | ||| || |||||||||| ||||||||| ||||    
T  21549214 caacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtctcaagttc 21549142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 25627061 - 25627173
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||| |   ||| || ||||||||||||| |||||||||| ||| |||||| |||  |||||| |  ||||||    
T  25627061 cacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgtcaattt-gaggggtta 25627158  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  25627159 gtttagcttcttcaa 25627173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 37258424 - 37258328
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttctt 178  Q
    |||||||||||||||||||||  || || ||||||||||||| || ||||||| ||| |||||| |||  ||||||  | |||||||||||| |||||    
T  37258424 tagtggtattagcttgggatctaggagtgtgctcctcctcaaggtttcaggtt-cgattctctctggtgtcaatttgagggggttagtttagcttctt 37258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 17360807 - 17360775
Alignment:
Q  25 agattcacggaccaactgcccctgcaacaacaa 57  Q
    |||||||||||||||||||||||||||||||||    
T  17360807 agattcacggaccaactgcccctgcaacaacaa 17360775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 16436618 - 16436688
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||||||| ||||||||||| |||||||| |  || || ||||||||||||| |||||| ||||    
T  16436618 aactcacttgggttggcctagtggtattggcttggga-cttggagtgtgctcctcctcaaggtctcatgttc 16436688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 87495 - 87429
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggtt 133  Q
    ||||| |||||| |||||||||||  ||||| ||| ||| || ||||||||||||| ||||||||||    
T  87495 cacttcggttggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtctcaggtt 87429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 7918541 - 7918428
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||| | | ||| ||   ||||||||||| |||| ||||| ||| |||||| ||| |||||||  | || |||    
T  7918541 cacttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggtt-cgattctctctggtgccaatttgaggggttta 7918443  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  7918442 gtttagcttcttcaa 7918428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 14285165 - 14285266
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| | ||||| ||| |||||| | | ||| || ||||||||||||| |||||||||| ||| |||||| ||| |||||||  | ||||||    
T  14285165 cacttgggttggccgagtggaattggcttggaacctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctggtgccaatttgagggggtta 14285263  T
Q  167 gtt 169  Q
    |||    
T  14285264 gtt 14285266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 16457814 - 16457927
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||| |||||| || |||||||| |||||||| |  || || ||||||||||||| |||||| ||| | | |||| ||||| |||||||  ||||| ||    
T  16457814 cacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcatgtt-caattctccccggtgccaatttgcgtgggcta 16457912  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  16457913 gtttaggttcttcaa 16457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 43241758 - 43241720
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatc 101  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  43241758 aactcacttgggttggtctagtggtattgacttgggatc 43241720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 43442214 - 43442313
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttca 180  Q
    |||||||||| | ||| |||| ||| || ||||||||||||| |||||||||| ||| |||||| | |  |||||| | |||| || |||||||||||||    
T  43442214 tagtggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctctgttgtcaatttggatgggctaatttagtttcttca 43442312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 356
Target Start/End: Original strand, 38112367 - 38112527
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| ||||||||||||| |||||||| |||||||| ||| | |||||||||||||||||| |||||| ||| | | ||||||   | || ||||||||    
T  38112367 gcacatcaagcatcacggccctttcgagcacaacaaactcttattgcagtgaagagacatctgaaccacatcaggacgaatcaa---agcatcataacga 38112463  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttagagc 356  Q
    ||||||||||||||||||||||||  || |||||||||| ||  ||| ||||||||||||||||    
T  38112464 gtcttatgattcaacagaagcatgatgtgtcccctgaaggcagccacgctgtcttttttagagc 38112527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 4222145 - 4222248
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  |||||||||| |||||||||| ||| || |||||||||||||||||| ||||| ||| |||||| |||  ||||||||||| ||||    
T  4222145 cacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggtt-cgattctctctggtgtcaatttaggtgagtta 4222243  T
Q  167 gttta 171  Q
    |||||    
T  4222244 gttta 4222248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 47454689 - 47454576
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||| |||||||||||| ||||| ||||  || || ||||||||||| | |||||||||| ||| |||| ||  | |||||||||||||||||    
T  47454689 cacttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggtt-cgattctccccaatgccaatttaggtgggtta 47454591  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  47454590 gtttagcttcttcaa 47454576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 6513346 - 6513496
Alignment:
Q  193 gcacagcaagcatcacggctctttcgagtacaacaaagtctgactgcagtgaagagacatctaaaccacgtcaaggcaaatcaacacaacaacataacga 292  Q
    ||||| |||||||  || |||||||||| |||||||| |||||||||| ||| ||| ||||| ||| |||||||| | ||||| |||| |        ||    
T  6513346 gcacaacaagcattccgactctttcgagcacaacaaactctgactgcaatgacgagtcatctgaactacgtcaagacgaatcagcacagc--------ga 6513437  T
Q  293 gtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtctttttt 351  Q
    |||||| |||||||||| |||||||||| |||||||||| ||  |||||||||||||||    
T  6513438 gtcttacgattcaacaggagcatggcgtgtcccctgaaggcagccacactgtctttttt 6513496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 28703476 - 28703366
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||| |||| ||||||||||||||| ||| || |||||||| |||| |||||||||| ||| |||||| ||| |||||||  |  |||||    
T  28703476 cacttgggttggtccagtgatattagcttgggatctgggagtgtgctcctcttcaaggtctcaggtt-cgattctctctggtgccaatttgaggaggtta 28703378  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  28703377 gtttagcttctt 28703366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 30311314 - 30311423
Alignment:
Q  71 tgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagttt 170  Q
    |||||||| ||||||||||  |||||||||| ||| || ||||||||||||| |||||||||| ||| |||||  ||| |||||||  | ||||||||||    
T  30311314 tgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctttggtgccaatttgagggggttagttt 30311412  T
Q  171 agtttcttcaa 181  Q
    || ||||||||    
T  30311413 agcttcttcaa 30311423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 14186652 - 14186746
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtggg 163  Q
    |||||||||||| |||||||||||  ||||||| || || || ||||||||||||| |||||||||| ||| ||||||||||  |||||||||||||    
T  14186652 cacttgggttggcctagtggtattgtcttggga-cctggagtgtgctcctcctcaaggtctcaggtt-cgattctctccggtgtcaatttaggtggg 14186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 2667862 - 2667979
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgg 162  Q
    |||||| ||||||||| || |||||||| |||||||||| ||| || ||||| ||||| | ||||||||||| || | ||||  ||  ||||||||||||    
T  2667862 aactcatttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttc-gattatctctagtgtcaatttaggtgg 2667960  T
Q  163 gttagtttagtttcttcaa 181  Q
    | |||||||| ||||||||    
T  2667961 gctagtttagcttcttcaa 2667979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 46518632 - 46518745
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  |||||||||| |||||||||| ||| || ||||||||||||| || |||||||  || |||||| | | |||||||  | ||||||    
T  46518632 cacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtt-tgattctctctgatgccaatttgagggggtta 46518730  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  46518731 gtttagcttcttcaa 46518745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 4844580 - 4844472
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||||||||||| ||||||||  ||||||||| ||| || ||||||||||| | |||||||| | ||| |||||||||| |||||||  ||||| || ||    
T  4844580 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggat-cgattctctccggtgccaatttgtgtgggctaatt 4844482  T
Q  170 tagtttcttc 179  Q
    ||| ||||||    
T  4844481 tagcttcttc 4844472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 4870276 - 4870168
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||||||||||| ||||||||  ||||||||| ||| || ||||||||||| | |||||||| | ||| |||||||||| |||||||  ||||| || ||    
T  4870276 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggat-cgattctctccggtgccaatttgtgtgggctaatt 4870178  T
Q  170 tagtttcttc 179  Q
    ||| ||||||    
T  4870177 tagcttcttc 4870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 53412949 - 53413053
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||||||||||||||| |||||  | | ||| || ||||||||||||| |||||||||| | | |||||| ||| |||||||  | ||||||    
T  53412949 cacttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggtt-caattctctctggtgccaatttgagggggtta 53413047  T
Q  167 gtttag 172  Q
    ||||||    
T  53413048 gtttag 53413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 36720385 - 36720495
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||| |||||||| |||||||||  ||| || ||||||||||| | || ||||||| ||| ||||||  ||  ||||||||||||| |     
T  36720385 cacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggtt-cgattctctctagtgtcaatttaggtgggctg 36720483  T
Q  167 gtttagtttctt 178  Q
    |||||| |||||    
T  36720484 gtttagcttctt 36720495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 44069805 - 44069875
Alignment:
Q  110 tgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||||||||| ||||||||||  || ||| |||||| |||||||||||||| |||||||| ||||||||    
T  44069805 tgctcctcctcaaggtctcaggttt-gattctttccggtgccaatttaggtgggctagtttagcttcttcaa 44069875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 8051218 - 8051331
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| |||||||| | ||  ||||||| |||||| | |||||| ||| ||| || ||||||| ||||||||| |||| |     
T  8051218 cacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctcaagtt-cgattccctccggtgccaatttagttgggctc 8051316  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  8051317 gtttagcttcttcaa 8051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 10499181 - 10499068
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| || |||||||| |||||||||| ||| || ||||| ||||  | |||||||||| ||| |||||||| |  |||||| |||||| ||    
T  10499181 cacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggtt-cgattctctccgatgtcaatttgggtgggcta 10499083  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  10499082 atttagcttcttcaa 10499068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 44743902 - 44743815
Alignment:
Q  92 gcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttca 180  Q
    |||||||||| ||| || ||||||||||| | |||||||||| ||| | ||||| || ||||||| ||||||||| ||||| |||||||    
T  44743902 gcttgggatctgggagtgtgctcctcctcgaggtctcaggtt-cgattatctccagtgccaatttgggtgggttaatttagcttcttca 44743815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 14339617 - 14339727
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    |||| |||| || |||||||| |||||||||  ||| || ||||||||||||| |||||||||| ||| |||| |  || |||||| ||||||| || ||    
T  14339617 ttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggtt-cgattctccctagtgccaattaaggtgggctaatt 14339715  T
Q  170 tagtttcttcaa 181  Q
    ||| ||||||||    
T  14339716 tagcttcttcaa 14339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 38112333 - 38112364
Alignment:
Q  25 agattcacggaccaactgcccctgcaacaaca 56  Q
    ||||||||||||||||||||||||||||||||    
T  38112333 agattcacggaccaactgcccctgcaacaaca 38112364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 40063623 - 40063737
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaattt-aggtgggtt 165  Q
    |||||||||||   |||| ||||| |||||||||| | | ||||||||||||| || |||||| ||| ||| ||||||| || ||||||| ||| || ||    
T  40063623 cacttgggttgacttagtagtattggcttgggatctgagagtatgctcctccttaaggtctcaagtt-cgattctctccagtgccaatttgagggggttt 40063721  T
Q  166 agtttagtttcttcaa 181  Q
    ||||||| ||||||||    
T  40063722 agtttagcttcttcaa 40063737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 42465606 - 42465539
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcag 130  Q
    |||||| ||||||||||||  |||||||||||||| |   |||||| |||||||||| ||||||||||    
T  42465606 aactcatttgggttggtctgatggtattagcttggaacttgggggtgtgctcctccttaaagtctcag 42465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 27093433 - 27093367
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggtt 133  Q
    |||||||||||| ||||||||||| |||||| |   ||| || ||||||||||||| ||||||||||    
T  27093433 cacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtt 27093367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 28928951 - 28928889
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctca 129  Q
    ||||||| |||| ||||||||||| |||||||||| | | || |||||||||||||| |||||    
T  28928951 cacttggattggcctagtggtattggcttgggatctgagagtgtgctcctcctcaaattctca 28928889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 31789047 - 31788989
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctc 120  Q
    |||| |||||||||||| |||||| |||| |||||||||| ||| || |||||||||||    
T  31789047 caacccacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctc 31788989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 15819365 - 15819297
Alignment:
Q  285 cataacgagtcttatgattcaacagaagcatggcgtatcccctgaagacaatcacactgtcttttttaga 354  Q
    ||||||||||| ||||||| |||||||||||||||| | | |||||| ||  |||||| |||||||||||    
T  15819365 cataacgagtcgtatgatttaacagaagcatggcgtgt-ctctgaaggcagccacactatcttttttaga 15819297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 51903933 - 51903837
Alignment:
Q  84 tggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttcaa 181  Q
    ||||||| |||||||||| ||| || |||||||||||   |||||||||| ||| ||||||||||  ||||||  ||||| || ||||| ||||||||    
T  51903933 tggtattggcttgggatctgggagtgtgctcctcctcgtggtctcaggtt-cgattctctccggtgtcaatttgagtgggctaatttagcttcttcaa 51903837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 6513312 - 6513344
Alignment:
Q  25 agattcacggaccaactgcccctgcaacaacaa 57  Q
    |||||||||||| ||||||||||||||||||||    
T  6513312 agattcacggacaaactgcccctgcaacaacaa 6513344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 7975428 - 7975488
Alignment:
Q  73 ggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggtt 133  Q
    |||||| ||||||||||  |||||||||| ||| || ||||||||||||| |||| |||||    
T  7975428 ggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtcttaggtt 7975488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 15048133 - 15048030
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  || ||||||  |||||||||| |||  | ||||||||||||| |||||||||| ||| | |||| ||| |||||||  | ||||||    
T  15048133 cacttgggttggcttaatggtataggcttgggatctgggaatgtgctcctcctcaaggtctcaggtt-cgattatctctggtgccaatttgagggggtta 15048035  T
Q  167 gttta 171  Q
    |||||    
T  15048034 gttta 15048030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 16354969 - 16354897
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||| |||||||||||| ||||||||||| |||||| | | | | || ||||||||||||  |||||||||||    
T  16354969 caacccacttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttc 16354897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 47860767 - 47860823
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcag 130  Q
    ||||||||||| ||||| |||| |||||  || || |||||||||||||||||||||    
T  47860767 gttggtctagttgtattggctttggatctaggagtgtgctcctcctcaaagtctcag 47860823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 15400 - 15282
Alignment:
Q  62 caactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtg 161  Q
    |||| ||||||||||||||| |||||||| |||||||| | ||| || ||||||||||| | |||||||||| ||| |||||| | | ||||||||||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctctcggatgccaatttaggtg 15302  T
Q  162 ggttagtttagtttcttcaa 181  Q
    || || ||||| ||||||||    
T  15301 ggctaatttagcttcttcaa 15282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 1753 - 1870
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgg 162  Q
    |||||| ||||||||| |||||||| || |||||||| |  || || ||||||||||||| ||||  |||||  | ||||||||||| ||||||||||||    
T  1753 aactcatttgggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttca-attctctccggtatcaatttaggtgg 1851  T
Q  163 gttagtttagtttcttcaa 181  Q
    |||||||||  ||||||||    
T  1852 gttagtttaacttcttcaa 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 24507612 - 24507495
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgg 162  Q
    |||||| ||||||||| |||||||| || |||||||| |  || || ||||||||||||| ||||  |||||  | ||||||||||| ||||||||||||    
T  24507612 aactcatttgggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttca-attctctccggtatcaatttaggtgg 24507514  T
Q  163 gttagtttagtttcttcaa 181  Q
    |||||||||  ||||||||    
T  24507513 gttagtttaacttcttcaa 24507495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 30127404 - 30127517
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||| |||||||| ||||||| || ||| || |||||||| || | |||||||||| ||| ||| |||||| ||||||||||| |||||    
T  30127404 cacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggtt-cgattctttccggtgccaatttaggtaggtta 30127502  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||| ||||    
T  30127503 atttagcttcctcaa 30127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 33549108 - 33549218
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||| |||||||| |||||||| | ||| || ||||||||||| | |||||||||| ||| |||||| | | |||||||||||| | ||    
T  33549108 cacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctctcggatgccaatttaggtgagcta 33549206  T
Q  167 gtttagtttctt 178  Q
     ||||| |||||    
T  33549207 atttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 12188375 - 12188262
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||| || ||| ||| ||| ||||||  || |||||||  | ||||||    
T  12188375 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagtt-cgattctctctagtgccaatttgagggggtta 12188277  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  12188276 gtttagcttcttcaa 12188262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 6776682 - 6776617
Alignment:
Q  64 actcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctca 129  Q
    ||||||||||||||| || |||||||| |||||||||| |||||| ||||||||||| | ||||||    
T  6776682 actcacttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctca 6776617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 31623063 - 31622950
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||  |||||||| |||||||| | ||| || ||||||||||| | ||||||||||  || || |||||||  |||||| |||||| ||    
T  31623063 cacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt-tgaatcactccggtgtcaatttgggtgggcta 31622965  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  31622964 atttagcttcttcaa 31622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 10338250 - 10338179
Alignment:
Q  63 aactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||||||  | |||||||| |||||||| |  || || ||||||||||||| |||||||||||    
T  10338250 aactcacttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttc 10338179  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22564320 - 22564253
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||||||||||||||| ||| ||||||| |  || | |||||||||||||| |||||| ||||    
T  22564320 cacttgggttggtctagtggtgttaccttgggagcttggagcatgctcctcctcaaggtctcatgttc 22564253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 24334057 - 24333987
Alignment:
Q  107 gtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttctt 178  Q
    |||||||||||||||| |||||||||| | | |||| ||||| ||||||| |||||| |||||||| |||||    
T  24334057 gtatgctcctcctcaaggtctcaggtt-caattctcaccggtgccaatttgggtgggctagtttagcttctt 24333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 1056757 - 1056644
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||  ||||||||||| || |||||   ||| |||||||| ||||||| || | | |||| || |||||| ||| |||| ||||||||||||    
T  1056757 cacttgggttgacctagtggtattggcctgggacttgggagtatgctcatcctcaaggttttaagttc-gattctctctggtgccaagttaggtgggtta 1056659  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  1056658 atttagcttcttcaa 1056644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 15951381 - 15951264
Alignment:
Q  60 atcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttagg 159  Q
    |||||| || ||||||||  || ||||||| |||||| |||  ||| || ||||||||||||| |||||| ||| | | |||||| |||||||||||  |    
T  15951381 atcaacccagttgggttgtccttgtggtataagcttgagatttgggagtgtgctcctcctcaaggtctcatgtt-caattctctctggtaccaatttgag 15951283  T
Q  160 tgggttagtttagtttctt 178  Q
     |||||||||||| |||||    
T  15951282 agggttagtttagcttctt 15951264  T

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Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 42589 - 42480
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtt 169  Q
    ||||||||| |||||||||||  ||||| ||| ||| ||||||||||||||| ||||||||||| ||| |||||  ||| |||||||| | |||||| ||    
T  42589 ttgggttggcctagtggtattgacttggaatctgggagtatgctcctcctcagagtctcaggtt-cgattctctttggtgccaatttaag-gggttaatt 42492  T
Q  170 tagtttcttcaa 181  Q
    ||| ||||||||    
T  42491 tagcttcttcaa 42480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 968366 - 968476
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||| ||||| || |||||||| |||||||| | ||| || ||||||||||| | |||||||||| ||| |||||||| | |||||||||||||| ||    
T  968366 cacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctctccgatgccaatttaggtgggcta 968464  T
Q  167 gtttagtttctt 178  Q
     ||||| |||||    
T  968465 atttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 2203496 - 2203609
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||||| |||||||| | | | |||| ||||| ||||||| |||||| ||    
T  2203496 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggt-caattctccccggtgccaatttgggtgggcta 2203594  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| || |||||    
T  2203595 atttagcttattcaa 2203609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 3624584 - 3624696
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || |||||||| |||| |||||||||| ||| |||||||||   ||||||||||||| ||    
T  3624584 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggtt-cgattctctccgg-gtcaatttaggtgggcta 3624681  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| || |||||    
T  3624682 atttagctttttcaa 3624696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 6536538 - 6536635
Alignment:
Q  81 tagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggttagtttagtttcttc 179  Q
    |||||||||| |||||||| |  || || ||||||||||||| |||||||||| | | |||||| ||| ||||||||||||||||| ||||| ||||||    
T  6536538 tagtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggtt-caattctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 16852344 - 16852457
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || ||||||||||| | |||||||||| ||| ||||    || |||||||||||||| ||    
T  16852344 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt-cgattctccttagtgccaatttaggtgggcta 16852442  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  16852443 ttttagcttcttcaa 16852457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 18540302 - 18540415
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||| ||||||||||| |||||||| | ||| || | || |||||||| |||||||||| ||| |||||| ||| |||||||  | ||||||    
T  18540302 cacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggtt-cgattctctctggtgccaatttgagagggtta 18540400  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  18540401 atttagcttcttcaa 18540415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 30483963 - 30483889
Alignment:
Q  60 atcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||| |||||||||||| | ||||||||| |||||||||  ||| || |||||||||||| ||||||||||||    
T  30483963 atcaacccacttgggttggcccagtggtattggcttgggatatgggagtgtgctcctcctcagagtctcaggttc 30483889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 35690129 - 35690069
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||||||||||    
T  35690129 gttggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttc 35690069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 19703559 - 19703492
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||||||||||| |||||||| | | | || ||||||||||||| |||||||||||    
T  19703559 cacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttc 19703492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 11793593 - 11793480
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||| ||||| || |||||||| |  || || ||||||||||||| |||| |||||  || |||  ||||| ||||||| |||||| ||    
T  11793593 cacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtt-tgattcttcccggtgccaatttgggtgggcta 11793495  T
Q  167 gtttagtttcttcaa 181  Q
    |||||| ||||||||    
T  11793494 gtttagcttcttcaa 11793480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 20994536 - 20994419
Alignment:
Q  61 tcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcct-cctcaaagtctcaggttccgactctctccggtaccaatttagg 159  Q
    ||||| |||||||||||| |||||||||||  ||||||| | ||| || ||||||| ||||||||||||||| | ||| | |||| ||||||||||| |     
T  20994536 tcaacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctccctcaaagtctcaggat-cgattatctctggtaccaatttgga 20994438  T
Q  160 tgggttagtttagtttctt 178  Q
    |||| || ||||| |||||    
T  20994437 tgggctaatttagcttctt 20994419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 35641973 - 35641869
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||||| |||||||  ||||| |||  ||| || ||||||||||| | |||||||||| ||| ||||||| | |||||||||| |||| ||    
T  35641973 cacttgggttggtctggtggtatcggcttgagatttgggagtgtgctcctcctcgatgtctcaggtt-cgattctctccagaaccaatttagatgggcta 35641875  T
Q  167 gtttag 172  Q
     |||||    
T  35641874 atttag 35641869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 26688861 - 26688936
Alignment:
Q  59 catcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||| |||||||||||| || ||||| || |||||||| |  || || ||||||||||||| |||||||||||    
T  26688861 catcaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 28783064 - 28783177
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||||||||  | |||||||| ||||| || | ||| || ||||||||||||| |||||| ||| ||| ||||  |||| ||||||| |||||| ||    
T  28783064 cacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgtt-cgattctcctcggtgccaatttgggtgggcta 28783162  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| ||||||||    
T  28783163 atttagcttcttcaa 28783177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 29858121 - 29858008
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||| |||| || |||||||| |||||||| | ||| || ||||||||||| | |||||||||| ||| || |  |||| |||||||||||||| ||    
T  29858121 cacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggtt-cgattcccctcggtgccaatttaggtgggcta 29858023  T
Q  167 gtttagtttcttcaa 181  Q
     ||||| || |||||    
T  29858022 atttagctttttcaa 29858008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 44780186 - 44780120
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggtt 133  Q
    |||||||||||| ||||||| ||| ||||||||   ||| || ||||||||||||| ||||||||||    
T  44780186 cacttgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 44780120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 8794417 - 8794306
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    ||||||| ||||  |||||||||| |||||| | | ||  || ||||||||||||  |||||||||| ||| |||||| |||||||||||| | ||||||    
T  8794417 cacttggattggcatagtggtattggcttggaacctggaagtgtgctcctcctcagggtctcaggtt-cgattctctctggtaccaatttaag-gggtta 8794320  T
Q  167 gtttagtttcttca 180  Q
     ||||| |||||||    
T  8794319 atttagcttcttca 8794306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 23361721 - 23361617
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||||  || ||||||||  ||||||||  ||| || ||||||||||||| |||||||||| | | |||||| |||  ||||||||||||| ||    
T  23361721 cacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggtt-caattctctctggtgtcaatttaggtgggcta 23361623  T
Q  167 gtttag 172  Q
     |||||    
T  23361622 atttag 23361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 42740501 - 42740565
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||||||||||||||||||  ||  ||| || || || ||||||| |||||||||||    
T  42740501 ttgggttggtctagtggtattagcttgaaatttgggagtttgatcatcctcaaggtctcaggttc 42740565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 6988 - 6924
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||||||| ||||||||||| ||||||||   ||| || |||||||||||||||||||||||||    
T  6988 ttgggttggcctagtggtattggcttgggactggggagtgtgctcctcctcaaagtctcaggttc 6924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 13129 - 13023
Alignment:
Q  56 aagcatcaactcacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatt 155  Q
    |||| ||||||||||| ||||||  | |||||||| ||||| |||| ||| || ||||||||||||| |||||||||| ||| |||||||| |  |||||    
T  13129 aagcctcaactcacttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggtt-cgattctctccgatgtcaatt 13031  T
Q  156 taggtggg 163  Q
    | ||||||    
T  13030 tgggtggg 13023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 41705 - 41638
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||||||||||| ||||| |||| | | |||||||||||||| | |||||||||||    
T  41705 cacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttc 41638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 95043 - 94976
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||| ||||||||||| |||||| | | ||| || ||||||||||||| |||||||||||    
T  95043 cacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttc 94976  T

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Target: scaffold0056 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 61716 - 61643
Alignment:
Q  71 tgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctc 144  Q
    ||||||| |||||||||||| |||||||| | ||| ||||| ||||||| |||||||| | |||||| ||||||    
T  61716 tgggttgatctagtggtattggcttgggacctgggagtatggtcctccttaaagtctctgattccgattctctc 61643  T

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Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 20027 - 19967
Alignment:
Q  74 gttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    ||||| ||||||||||| |||||| | | ||| |||||||||||||||| |||||||||||    
T  20027 gttggcctagtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttc 19967  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 15043 - 14934
Alignment:
Q  67 cacttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttccgactctctccggtaccaatttaggtgggtta 166  Q
    |||||||||| ||||  || |||| |||| ||| | ||| |||||||||||||| |||||||||||| ||| |||||||||  | ||||| |||||||||    
T  15043 cacttgggttagtctgatgctattggcttaggaactgggagtatgctcctcctc-aagtctcaggtt-cgattctctccggggctaatttgggtgggtta 14946  T
Q  167 gtttagtttctt 178  Q
     ||| |||||||    
T  14945 atttcgtttctt 14934  T

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Target: scaffold1367 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 910 - 845
Alignment:
Q  69 cttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||| ||| || |||||||| |||||||||| |||  | ||||||||||| |||||||||||||    
T  910 cttggggtggcctggtggtattggcttgggatctgggaatgtgctcctcctcgaagtctcaggttc 845  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 11534 - 11599
Alignment:
Q  69 cttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||| ||| || |||||||| |||||||||| ||| || ||||||||||| | |||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttc 11599  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 2539 - 2475
Alignment:
Q  70 ttgggttggtctagtggtattagcttgggatccgggggtatgctcctcctcaaagtctcaggttc 134  Q
    |||||||||||  |||||||| | || ||||| ||| || ||||||||||||| |||||||||||    
T  2539 ttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttc 2475  T

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