View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_20 (Length: 370)
Name: NF1412_high_20
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 32851254 - 32851594
Alignment:
| Q |
18 |
caaggaaccaacgaggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851254 |
caaggaaccaacgaggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggt |
32851353 |
T |
|
| Q |
118 |
ttgcagctctccaatctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttgaattccaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
32851354 |
ttgcagctctccaatctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgcattttgtttgcttcacttgaattccaagaa |
32851453 |
T |
|
| Q |
218 |
agtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatc |
317 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851454 |
agtatttcattaatccaagatctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatc |
32851553 |
T |
|
| Q |
318 |
atcaacatagagacaaaccatcaagaaattagcaccacttc |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851554 |
atcaacatagagacaaaccatcaagaaattagcaccacttc |
32851594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 37174397 - 37174737
Alignment:
| Q |
18 |
caaggaaccaacgaggcttctgtaggcttttggatctgccttttctgaaccatcattcagctgcaacttttcatttaaggccattggggttgagactggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37174397 |
caaggaaccaacgaggcttctgtaggcttttggatctgccttttctgcaccatcattcagctgcaacttttcatttaaggccattggggttgagactggt |
37174496 |
T |
|
| Q |
118 |
ttgcagctctccaatctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttgaattccaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37174497 |
ttgcagctctccaatctgaactatttaagcaaatcatgaatgtatttttcctgtgtgataaaaatctcgccttttgtttgcttcacttgaattccaagaa |
37174596 |
T |
|
| Q |
218 |
agtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatc |
317 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37174597 |
agtatttcattaatccaagatctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgcataaattaaatc |
37174696 |
T |
|
| Q |
318 |
atcaacatagagacaaaccatcaagaaattagcaccacttc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
37174697 |
atcaacatagagacaaaccatcaagaaattaacaccacttc |
37174737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 32528302 - 32528246
Alignment:
| Q |
208 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
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|
| T |
32528302 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
32528246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 205 - 358
Target Start/End: Original strand, 20737931 - 20738084
Alignment:
| Q |
205 |
tgaattccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
20737931 |
tgaattccaagaaagtatttcattaatccaacatctgtcatctcatattctttcatcattgctttcttgaatgactgcaccatatcatgatttgttcctg |
20738030 |
T |
|
| Q |
305 |
cataaattaaatcatcaacatagagacaaaccatcaagaaattagcaccacttc |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20738031 |
cataaattaaatcatcaacatagaaacaaaccatcaagaaattagcaccacttc |
20738084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 7907285 - 7907217
Alignment:
| Q |
98 |
ccattggggttgagactggtttgcagctctccaatctgaactttttaagcaaatcatgaatgtattttt |
166 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
7907285 |
ccattggggtttagaatggtttgcaactctccaatctaatatttttaagacaatcatgaatgtattttt |
7907217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 18397601 - 18397403
Alignment:
| Q |
107 |
ttgagactggtttgcagctctccaatctgaactttttaagcaaatcatgaatgtatttttcttgtgtgataaaaatctcgccttttatttgcttcacttg |
206 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| |
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|
| T |
18397601 |
ttgagactagtttgcaattctccaatttgaattttttaagcaaatcatgaatgtatttttcttgcgtgataaaaatatctcctttcgtttgtttcacttg |
18397502 |
T |
|
| Q |
207 |
aattccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcattgcttccttgaacgactgcaccatatcatgatttgttcctgc |
305 |
Q |
| |
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|||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||| | ||||||||| || || |||||||||| | |||||| |||||| |
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| T |
18397501 |
aattccgagaaagtacttcatcaatccaagatctatcatctcatattctttcatgactgcttcctttaatgattgcaccatattaggatttgctcctgc |
18397403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 28394089 - 28394033
Alignment:
| Q |
208 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
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|
| T |
28394089 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
28394033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 6832006 - 6832062
Alignment:
| Q |
208 |
attccaagaaagtatttcattaatccaaggtctgtcatctcatattctttcatcatt |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
6832006 |
attccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatt |
6832062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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