View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_high_22 (Length: 370)

Name: NF1412_high_22
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_high_22
NF1412_high_22
[»] chr2 (14 HSPs)
chr2 (96-175)||(41702128-41702207)
chr2 (96-175)||(30602345-30602424)
chr2 (97-170)||(27494172-27494245)
chr2 (96-158)||(3208416-3208478)
chr2 (96-165)||(9685587-9685656)
chr2 (97-158)||(13413224-13413285)
chr2 (98-170)||(20143119-20143191)
chr2 (96-158)||(4413238-4413300)
chr2 (96-170)||(28224861-28224935)
chr2 (126-170)||(2626049-2626093)
chr2 (99-158)||(42122690-42122749)
chr2 (121-175)||(10587152-10587206)
chr2 (96-158)||(18745126-18745188)
chr2 (96-170)||(19161955-19162029)
[»] chr8 (6 HSPs)
chr8 (96-175)||(38815150-38815229)
chr8 (96-158)||(18596771-18596833)
chr8 (96-158)||(18804486-18804548)
chr8 (96-158)||(22589508-22589570)
chr8 (98-170)||(44337201-44337272)
chr8 (96-165)||(24350894-24350963)
[»] chr4 (18 HSPs)
chr4 (96-158)||(40392726-40392788)
chr4 (96-170)||(3329857-3329931)
chr4 (97-169)||(12053329-12053401)
chr4 (96-175)||(26521345-26521424)
chr4 (102-161)||(50464474-50464533)
chr4 (96-170)||(50001098-50001172)
chr4 (96-168)||(39001260-39001332)
chr4 (96-170)||(23255574-23255648)
chr4 (96-158)||(30940904-30940966)
chr4 (96-170)||(31846964-31847038)
chr4 (97-170)||(53619447-53619520)
chr4 (96-171)||(23604950-23605025)
chr4 (96-151)||(50463115-50463170)
chr4 (96-170)||(4419125-4419198)
chr4 (96-170)||(55933632-55933706)
chr4 (96-157)||(50442651-50442712)
chr4 (133-165)||(8125449-8125481)
chr4 (96-158)||(600864-600926)
[»] chr3 (13 HSPs)
chr3 (96-175)||(39583401-39583480)
chr3 (96-170)||(26772619-26772693)
chr3 (96-158)||(32546668-32546730)
chr3 (96-175)||(8591997-8592076)
chr3 (96-158)||(44706-44768)
chr3 (96-154)||(26856934-26856992)
chr3 (96-170)||(38671052-38671126)
chr3 (96-158)||(53785582-53785644)
chr3 (104-158)||(4763972-4764026)
chr3 (96-158)||(37133171-37133233)
chr3 (97-158)||(44198640-44198701)
chr3 (129-158)||(49017840-49017869)
chr3 (131-171)||(4472922-4472962)
[»] chr7 (14 HSPs)
chr7 (96-170)||(45003069-45003143)
chr7 (96-158)||(45614014-45614076)
chr7 (97-170)||(38766185-38766258)
chr7 (108-170)||(38832163-38832225)
chr7 (97-170)||(19277152-19277225)
chr7 (120-171)||(2520917-2520968)
chr7 (96-158)||(21327010-21327072)
chr7 (121-170)||(36931899-36931948)
chr7 (102-158)||(45974777-45974833)
chr7 (97-171)||(9281309-9281383)
chr7 (97-171)||(9292280-9292354)
chr7 (96-158)||(25187103-25187165)
chr7 (96-170)||(28517459-28517533)
chr7 (128-169)||(40726684-40726725)
[»] chr6 (10 HSPs)
chr6 (96-170)||(17249477-17249551)
chr6 (97-170)||(33220884-33220957)
chr6 (96-171)||(34168781-34168856)
chr6 (96-170)||(7749342-7749416)
chr6 (97-165)||(28009160-28009228)
chr6 (117-171)||(947961-948015)
chr6 (141-175)||(27903854-27903888)
chr6 (96-170)||(28543258-28543332)
chr6 (96-165)||(3137419-3137488)
chr6 (130-158)||(749534-749562)
[»] chr1 (16 HSPs)
chr1 (96-158)||(868573-868635)
chr1 (96-170)||(5453956-5454030)
chr1 (96-158)||(22346768-22346830)
chr1 (96-171)||(30688417-30688492)
chr1 (96-158)||(19035352-19035414)
chr1 (96-158)||(7213116-7213178)
chr1 (96-158)||(1114040-1114102)
chr1 (96-170)||(2898563-2898637)
chr1 (96-158)||(24177683-24177745)
chr1 (96-158)||(28493503-28493565)
chr1 (96-158)||(31737494-31737556)
chr1 (96-156)||(28041299-28041359)
chr1 (127-170)||(6670308-6670351)
chr1 (99-158)||(21472876-21472935)
chr1 (96-158)||(20259969-20260031)
chr1 (102-170)||(6790841-6790909)
[»] scaffold0009 (1 HSPs)
scaffold0009 (96-158)||(102979-103041)
[»] scaffold0406 (1 HSPs)
scaffold0406 (97-158)||(6761-6822)
[»] chr5 (7 HSPs)
chr5 (96-152)||(11005757-11005813)
chr5 (97-170)||(35310309-35310382)
chr5 (98-170)||(33692226-33692298)
chr5 (96-158)||(42921571-42921633)
chr5 (102-170)||(2917539-2917607)
chr5 (96-154)||(8100431-8100489)
chr5 (96-170)||(27336556-27336630)
[»] scaffold0309 (1 HSPs)
scaffold0309 (103-158)||(5197-5252)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 41702207 - 41702128
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||    
T  41702207 gattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaatccttg 41702128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 30602424 - 30602345
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    |||||||||||||||||||| ||||||||  ||||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  30602424 gattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaatccttg 30602345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 27494245 - 27494172
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||||| ||| |||  |||||||||||||| | |||||||| |||||||||||||||||||    
T  27494245 attggttttgccatccaaaaaggtctaacggcgcagcttgttgcctgcttgcctcctattcatatgtaagtaat 27494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 3208416 - 3208478
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| |||  ||| |||||||||||||| ||||||||||||||||||    
T  3208416 gattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattca 3208478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 9685587 - 9685656
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaa 165  Q
    ||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||| |||||| ||||||    
T  9685587 gattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttatattcaaatgtaa 9685656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 13413285 - 13413224
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||||| |||||||  ||| |||||||||||||||||| ||||||||||    
T  13413285 attggttttgccatccaaaaaggcctaacggctcagcttgttgtccgcttgtcttctattca 13413224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 20143119 - 20143191
Alignment:
Q  98 ttggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||| ||| |||| |||||| ||||||||| | |||||||||||||| |||||| ||||    
T  20143119 ttggttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattcaaatgtaaataat 20143191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 4413238 - 4413300
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||||||||| ||| |||| |||||||||||||| || |||||||||||||||    
T  4413238 gattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccacttgccttctattca 4413300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 28224935 - 28224861
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||| ||||||||||||||| ||| |||| |||||||||| ||| ||||||| || |||||||| ||||||||||    
T  28224935 gatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgcttgtctcctattcatttgtaagtaat 28224861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 2626049 - 2626093
Alignment:
Q  126 ggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  2626049 ggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 42122749 - 42122690
Alignment:
Q  99 tggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||| | | |||| |||||||||| |||| |||||||||||||||||    
T  42122749 tggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttctattca 42122690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 10587152 - 10587206
Alignment:
Q  121 ctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    |||| |||| ||||||||| ||| ||||||||||||||| |||||||||||||||    
T  10587152 ctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaatccttg 10587206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 18745126 - 18745188
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||| |||  |||||| ||||||||||    
T  18745126 gattggttttgccatccaaaaaggtctagcggcgcagcttattgctcgcttgtcttctattca 18745188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 19161955 - 19162029
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| ||||| |||||||| || | ||| ||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  19161955 gattgattttgtcatccaaaaagacgtagtggcgcagcttgctgtccgcttgctttctattcaaatgtaaataat 19162029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 38815229 - 38815150
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  38815229 gattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatgtgtaagcaatccttg 38815150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 18596771 - 18596833
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||| || ||| |||| |||||||||||||||| ||||||||||||||||    
T  18596771 gattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattca 18596833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 18804548 - 18804486
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||||    
T  18804548 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttctattca 18804486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 22589508 - 22589570
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||| ||||||    
T  22589508 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttttattca 22589570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 44337272 - 44337201
Alignment:
Q  98 ttggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||| ||| | || ||| ||||||||||  ||||||||| |||||||| ||||||||||    
T  44337272 ttggttttgccatccaaaaaggtccagcggc-cagcttgttgctcgcttgcctcctattcatgtgtaagtaat 44337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 24350894 - 24350963
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaa 165  Q
    ||||||||||||| |||||| | |||||| ||| |||| ||||| ||||||  ||||||||||| |||||    
T  24350894 gattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaa 24350963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 40392726 - 40392788
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  40392726 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 40392788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 3329931 - 3329857
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |||||||  ||||||||||    
T  3329931 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaat 3329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 12053401 - 12053329
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaa 169  Q
    ||||||||||||||| ||| ||||| || | |||||||||||||| ||||||||||||||||| |||||||||    
T  12053401 attggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaagtaa 12053329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 26521424 - 26521345
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    ||||||||||| |||||||| |||  ||| ||| |||||| ||||||||||||||||||| ||| |||||||||||||||    
T  26521424 gattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgccttctatccatgtgtaagtaatccttg 26521345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 50464474 - 50464533
Alignment:
Q  102 ttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatat 161  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||    
T  50464474 ttttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttctatttatat 50464533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 50001098 - 50001172
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||||| ||  |||| |||||||||||||| |||||||||| |||||||| ||||||||||    
T  50001098 gattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 39001332 - 39001260
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagta 168  Q
    ||||||||||| |||||||| ||| |||| ||||||| |||||| |||||||||| |||||||| ||||||||    
T  39001332 gattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgcttgcctcctattcatgtgtaagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 23255648 - 23255574
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||| | | | |||| ||||||||||||||||||||| ||| |||||||||||| ||||||    
T  23255648 gattgattttgccatccagaaaagtctagcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaat 23255574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 30940904 - 30940966
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||||||||| ||| |||| | |||||||||||| ||||||||||||||||||    
T  30940904 gattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctattca 30940966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 31847038 - 31846964
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||| ||| ||||||||||| ||| |||| ||||||| |||||| |||||||||| |||||||| ||||||||||    
T  31847038 gattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtgtaagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 53619520 - 53619447
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| |  ||| ||| |||||||| ||||||||||    
T  53619520 attggttttgccatccaaaaaggtctagcggcgcagcttgttgcctacttacctcctattcatgtgtaagtaat 53619447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 23605025 - 23604950
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    ||||| ||||| |||||||| ||| |||| |||||| ||||||||||| ||| ||||||||||| ||||| |||||    
T  23605025 gattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataatc 23604950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 50463115 - 50463170
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgcctt 151  Q
    |||| ||||||||||||||| || ||||| ||||||||||| ||||||||||||||    
T  50463115 gatttgttttgccatccaaaaagacctagcggcgcagcttgctgtccgcttgcctt 50463170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 4419198 - 4419125
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||||| |  | ||| |||||||||||||| |||||||||| |||||||| || |||||||    
T  4419198 gattggttttgccatccaaaaaatc-tagcggcgcagcttgttgcccgcttgcctcctattcatgtgcaagtaat 4419125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 55933632 - 55933706
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||||| | | |||| | ||||| ||||||||||||||||| |||||||| || |||||||    
T  55933632 gattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgcttgcctcctattcatgtgcaagtaat 55933706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 50442651 - 50442712
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattc 157  Q
    |||||||||||||||||||| |||  ||| |||||||||||||| ||||||| |||| ||||    
T  50442651 gattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtcttccattc 50442712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 8125481 - 8125449
Alignment:
Q  133 cttgttgtccgcttgccttctattcatatgtaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  8125481 cttgttgtccgcttgccttctattcatatgtaa 8125449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 600864 - 600926
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||| ||||||||||||||| | |  ||| | || ||||||||||||||||||||||||||||    
T  600864 gattagttttgccatccaaaaatgtatagcgacgtagcttgttgtccgcttgccttctattca 600926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 39583401 - 39583480
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    ||||| |||||||||||||| ||| |||| |||||| ||||||||| |||||| |||||||||| |||||||||||||||    
T  39583401 gattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaagtaatccttg 39583480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 26772693 - 26772619
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||||| ||| |||| |||||||||||||| |||||||||| |||||||| ||||||||||    
T  26772693 gattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 26772619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 32546730 - 32546668
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  32546730 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattca 32546668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 8592076 - 8591997
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatccttg 175  Q
    ||||| |||||||||||||| ||||| || |||||||||||||  || |||||||| ||||||| |||||||||| ||||    
T  8592076 gattgattttgccatccaaaaaggcccagcggcgcagcttgttacccacttgccttatattcatgtgtaagtaattcttg 8591997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 44768 - 44706
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||| ||||||||||||||| ||| |||| ||||||| |||||| ||||||||||||||||||    
T  44768 gatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgccttctattca 44706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 26856934 - 26856992
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttcta 154  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||  |||||||||||||    
T  26856934 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 26856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 38671052 - 38671126
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||| ||| | | |||| ||||||||||||||||||||| ||| ||||| || ||||| ||||    
T  38671052 gattggttttgccatctaaaaaagtctagcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataat 38671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 53785644 - 53785582
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||  ||| | || |||| ||||||||| ||||||||||||||||||    
T  53785644 gattggttttgccatccaacaaggtccagcggcgtagcttgttgcccgcttgccttctattca 53785582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 4763972 - 4764026
Alignment:
Q  104 ttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||| |||| | | |||||| ||||||| ||||||||||||||||||    
T  4763972 ttgccatccaaaaaggcttggtggcgcaacttgttgcccgcttgccttctattca 4764026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 37133171 - 37133233
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||| ||||||| ||| |||| ||||||| |||||||||  ||| ||||||||||    
T  37133171 gattggttttgcgatccaaaaaggtctagcggcgcagtttgttgtcccattgtcttctattca 37133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 44198701 - 44198640
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||| |||||||||||||| |||   || | | |||||||||||||||||||||||||||||    
T  44198701 attgattttgccatccaaaaaggttgagcgacacagcttgttgtccgcttgccttctattca 44198640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 49017869 - 49017840
Alignment:
Q  129 gcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||||||||||||||||    
T  49017869 gcagcttgttgtccgcttgccttctattca 49017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 4472962 - 4472922
Alignment:
Q  131 agcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  4472962 agcttgttatccgcttgtcttctattcatgtgtaagtaatc 4472922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 45003069 - 45003143
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||||| ||| |||| |||||||||| |||||||||||||| |||||||| ||||||||||    
T  45003069 gattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaat 45003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 45614014 - 45614076
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||    
T  45614014 gattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 45614076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 38766258 - 38766185
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||| |||||||| ||||||||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 38766185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 38832225 - 38832163
Alignment:
Q  108 catccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||| ||| |||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  38832225 catccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaat 38832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 19277225 - 19277152
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||||| ||| |||| |||||||||| ||| |||| ||||||||||||| |||||| ||||    
T  19277225 attggttttgccatccaaaaaggtctagcggcgcagcttattgcccgcctgccttctattcaaatgtaaataat 19277152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 2520917 - 2520968
Alignment:
Q  120 cctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  2520917 cctagcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaatc 2520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 21327010 - 21327072
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||||||||| ||| |||  |||||||||||||||| ||||||||||||||||    
T  21327010 gattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctgcttgccttctattca 21327072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 36931899 - 36931948
Alignment:
Q  121 ctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  36931899 ctagcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaat 36931948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 45974777 - 45974833
Alignment:
Q  102 ttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||| ||| |||| |||||||||||||||||||||| ||||||||||    
T  45974777 ttttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattca 45974833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 9281309 - 9281383
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    ||||||||||| ||||||| |||| ||  || |||| |||||||| |||| |||| ||||||||||||| |||||    
T  9281309 attggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttaccttatattcatatgtaattaatc 9281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 9292280 - 9292354
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    ||||||||||| ||||||| |||| ||  || |||| |||||||| |||| |||| ||||||||||||| |||||    
T  9292280 attggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttaccttatattcatatgtaattaatc 9292354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 25187103 - 25187165
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||| ||||| ||| ||  |||| |||||||||||||| ||||||||||||||||||    
T  25187103 gattgattttaccatctaaaaagatctagcggcgcagcttgttgcccgcttgccttctattca 25187165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 28517459 - 28517533
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||||| | | |||| | | |||||||||| |||  ||||| |||||||| ||||||||||    
T  28517459 gattggttttgccatccaaaaaagtctagcgacacagcttgttgcccgtctgcctcctattcatgtgtaagtaat 28517533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 40726684 - 40726725
Alignment:
Q  128 cgcagcttgttgtccgcttgccttctattcatatgtaagtaa 169  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  40726684 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 17249477 - 17249551
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |||||||| | ||||||||    
T  17249477 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 17249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 33220884 - 33220957
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||||| || ||| |||| |||||||||||||| |||||||||| |||||||| ||||||||||    
T  33220884 attggttttgccatcctaaaaggtctagcggcgcagcttgttggccgcttgcctcctattcatgtgtaagtaat 33220957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 34168856 - 34168781
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    |||||||||||| ||||||| |||||||| |||||| ||||| | ||||||||||||||||||| ||||| |||||    
T  34168856 gattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaattaatc 34168781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 7749416 - 7749342
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||| || ||| |||| || ||||||||||| |||||||||| |||||||| ||||| ||||    
T  7749416 gattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaat 7749342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 28009160 - 28009228
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaa 165  Q
    |||| |||||| ||||||| |||||||  | |||||||| ||||||| ||||||||||||||| |||||    
T  28009160 attgattttgcaatccaaaaaggcctaacgacgcagcttattgtccgtttgccttctattcatgtgtaa 28009228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 948015 - 947961
Alignment:
Q  117 aggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    |||||||| |||||||||||| | ||||||||||| ||||||| ||||| |||||    
T  948015 aggcctagcggcgcagcttgtagaccgcttgccttatattcatgtgtaattaatc 947961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 27903854 - 27903888
Alignment:
Q  141 ccgcttgccttctattcatatgtaagtaatccttg 175  Q
    |||||||||||||||||||||||||||||| ||||    
T  27903854 ccgcttgccttctattcatatgtaagtaattcttg 27903888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 28543332 - 28543258
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||  || ||  |||| |||||| ||  |||||||||||||||||||||||  |||||||||    
T  28543332 gattggttttgccatctgaaaagatctagcggcgcaactaattgtccgcttgccttctattcatgcgtaagtaat 28543258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 3137419 - 3137488
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaa 165  Q
    |||||||||||||||||||| |||| |||  | ||| ||||||| ||| |||||||| |||||| |||||    
T  3137419 gattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgccttccattcatgtgtaa 3137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 749534 - 749562
Alignment:
Q  130 cagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||||||||||||    
T  749534 cagcttgttgtccgcttgccttctattca 749562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 868573 - 868635
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  868573 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattca 868635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 5454030 - 5453956
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||| |||||||||| |||||||| ||||||||||    
T  5454030 gattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 22346830 - 22346768
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  22346830 gattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 22346768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 30688492 - 30688417
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaatc 171  Q
    |||||||||||  ||||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||| |||||    
T  30688492 gattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaatc 30688417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 19035414 - 19035352
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||||| ||||||||||||||    
T  19035414 gattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattca 19035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 7213178 - 7213116
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||| ||||||||| ||| |||| |||||| ||||||| ||||||||||||||||||    
T  7213178 gattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattca 7213116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 1114040 - 1114102
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||  ||| |||||||||| ||||||| ||||||||||    
T  1114040 gattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattca 1114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 2898637 - 2898563
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||||||| |||| ||| |||| |||||||| ||| |||| |||||||||| |||||| ||||    
T  2898637 gattgattttgccatccaaaaaggcttagcggcgtagcttgttatccacttgtcttctattcaaatgtaaataat 2898563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 24177683 - 24177745
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||| ||||| ||| |||| || ||||||||||| ||||||| ||||||||||    
T  24177683 gattggttttgccaaccaaaaaggtctagcggtgcagcttgttgcccgcttgtcttctattca 24177745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 28493503 - 28493565
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||||||||| ||| |||| ||||||| |||||||||| ||| ||||||||||    
T  28493503 gattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattca 28493565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 31737494 - 31737556
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||| |||||||||||||| |||| | | |||||||||||||||| | ||||||||||||||    
T  31737494 gattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttctattca 31737556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 28041299 - 28041359
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctatt 156  Q
    ||||| |||| ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||    
T  28041299 gattgatttttccatccaaaaaggtctagcggcggagcttgttgtccgcttgtcttctatt 28041359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 6670308 - 6670351
Alignment:
Q  127 gcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||    
T  6670308 gcgcaccttgttgtccacttgccttctatttatatgtaagtaat 6670351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 21472935 - 21472876
Alignment:
Q  99 tggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||| ||| |||| |||||| ||| ||| |||||||| |||||||||    
T  21472935 tggttttgccatccaaaaaggtctagcggcgcaacttattgcccgcttgcattctattca 21472876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 20259969 - 20260031
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| ||||||| |||||| ||  ||| ||||||||||    
T  20259969 gattggttttgccatccaaaaaggtctagcggcgcagtttgttgccccattgtcttctattca 20260031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 6790841 - 6790909
Alignment:
Q  102 ttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||| || ||||| ||| ||| |||||  |||| |||||||||||||| ||||||||||    
T  6790841 ttttgtcatccaaaaagacctagcggcacagtttgttacccgcctgccttctattcatgtgtaagtaat 6790909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 103041 - 102979
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||| |||| |||||| ||||||| ||||||||||||||||||    
T  103041 gattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattca 102979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 6822 - 6761
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||||||||| ||| |||| | |||||||||||| ||||||||||||||||||    
T  6822 attggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattca 6761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 11005813 - 11005757
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttc 152  Q
    |||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||    
T  11005813 gattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttc 11005757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 35310382 - 35310309
Alignment:
Q  97 attggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||||||||||||||||| |||  ||  | |||||||||||| |||||||||| |||||||| ||||||||||    
T  35310382 attggttttgccatccaaagaggtttaacgacgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 35310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 33692226 - 33692298
Alignment:
Q  98 ttggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||| ||||||||| ||  |||| |||||||||||||| | |||||||| |||||||| ||||||||||    
T  33692226 ttggtttttccatccaaaaagatctagcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaat 33692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 42921633 - 42921571
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    |||||||||||||||||||| ||  |||| |||||||||||||  || |||||||||||||||    
T  42921633 gattggttttgccatccaaaaagatctagcggcgcagcttgtttcccacttgccttctattca 42921571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 2917539 - 2917607
Alignment:
Q  102 ttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    |||||||||||||| ||| |||| ||||||| |||||| | |||||||| |||||||| |||| |||||    
T  2917539 ttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaat 2917607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 8100489 - 8100431
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttcta 154  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||  |||||| |||||    
T  8100489 gattgattttgccatccaaaaaagcctagtggcgcagcttgttgtgagcttgctttcta 8100431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 27336630 - 27336556
Alignment:
Q  96 gattggttttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattcatatgtaagtaat 170  Q
    ||||| |||||||||| ||| ||| |||| || |||| || ||||||||||| || |||||||| ||||||||||    
T  27336630 gattgattttgccatcaaaaaaggtctagcggtgcagtttattgtccgcttgtctcctattcatgtgtaagtaat 27336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 5252 - 5197
Alignment:
Q  103 tttgccatccaaataggcctagaggcgcagcttgttgtccgcttgccttctattca 158  Q
    ||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||    
T  5252 tttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattca 5197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University