View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_29 (Length: 352)
Name: NF1412_high_29
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 24939516 - 24939843
Alignment:
| Q |
10 |
ataattcttgagttcattgctcataattatgtcttaatttatatataaataaaagagtccaataatttattccatgctttcaaaatccaaagggtagaga |
109 |
Q |
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| T |
24939516 |
ataattcttgagttcattgctcataattatgtcttaatttatatataaataaaagagtccaataatttattccatgctttcaaaatccaaagggtagaga |
24939615 |
T |
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| Q |
110 |
caaatttgagggttgttcatattggcttcaataaggtcctagaatatcataaccatcaatcttgctagctgggatattgcaacatattattataggatca |
209 |
Q |
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| T |
24939616 |
caaatttgagggttgttcacattggcttcaataaggtcctagaatatcataaccatcaatcttgctagctgggatattgcaacaaattatcaaaggatca |
24939715 |
T |
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| Q |
210 |
taagaagatattccattttagatcctaaagtttcagcttcatgctaaatgtaacgtttgaagaatccgtctgcatgtagataattaatttcaccttaatt |
309 |
Q |
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| T |
24939716 |
taagaagatattccattttagatcctaaagtttcagcttcattctaaatgtaacgtttgaagaatccgtctgcatgtagataattaatttcacgttaact |
24939815 |
T |
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| Q |
310 |
atgaactattcaaactaggatattcatg |
337 |
Q |
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| T |
24939816 |
atgaactattcaaactaggatattcatg |
24939843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 24937100 - 24937189
Alignment:
| Q |
197 |
tattataggatcataagaagatattccattttagatcctaa-agtttcagcttcatgctaaatgtaacgtttgaagaatccgtctgcatg |
285 |
Q |
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| T |
24937100 |
tattataggatcataaaaagatattccattttagattcttataaattgagcttcatgcaaaaggtaacgtttgaagaatccatctgcatg |
24937189 |
T |
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