View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_high_33 (Length: 344)

Name: NF1412_high_33
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_high_33
NF1412_high_33
[»] chr6 (15 HSPs)
chr6 (102-217)||(34100656-34100771)
chr6 (34-107)||(34149770-34149843)
chr6 (34-107)||(34162386-34162459)
chr6 (236-282)||(34149515-34149561)
chr6 (236-282)||(34162131-34162177)
chr6 (33-215)||(34169498-34169674)
chr6 (236-317)||(34115282-34115363)
chr6 (236-280)||(34169426-34169470)
chr6 (236-279)||(34091594-34091637)
chr6 (31-82)||(34115496-34115547)
chr6 (29-67)||(34091807-34091845)
chr6 (236-297)||(34109301-34109362)
chr6 (238-279)||(34119957-34119998)
chr6 (238-270)||(34147127-34147159)
chr6 (238-270)||(34159743-34159775)
[»] scaffold0620 (2 HSPs)
scaffold0620 (231-279)||(6928-6976)
scaffold0620 (29-67)||(7141-7179)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 34100771 - 34100656
Alignment:
Q  102 atatcagaatacaacatcttcgccaccgacttctgtgggtatgcaaattaatattaaaaagaactcaaatttagacaaagaaaataataaaaattgtttg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34100771 atatcagaatacaacatcttcgccaccgacttctgtgggtatgcaaattaatattaaaaagaactcaaatttagacaaagaaaataataaaaattgtttg 34100672  T
Q  202 aatctaaagcattgtt 217  Q
    ||||||||||||||||    
T  34100671 aatctaaagcattgtt 34100656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 34149843 - 34149770
Alignment:
Q  34 aacttgcctcagtttttatatcatatgcacactttgcatcattcatgcctctttcaattttagtaacgatatca 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || ||||| ||||    
T  34149843 aacttgcctcagtttttatatcatacgcacactttgcatcattcatgcctcttcgaatttcagcaacgacatca 34149770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 34162459 - 34162386
Alignment:
Q  34 aacttgcctcagtttttatatcatatgcacactttgcatcattcatgcctctttcaattttagtaacgatatca 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| || ||||| ||||    
T  34162459 aacttgcctcagtttttatatcatacgcacactttgcatcattcatgcctcttcgaatttcagcaacgacatca 34162386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 34149561 - 34149515
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatctcct 282  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34149561 aaacttgccttggattttgccaaagatctccttttggggtatctcct 34149515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 34162177 - 34162131
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatctcct 282  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34162177 aaacttgccttggattttgccaaagatctccttttggggtatctcct 34162131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 34169674 - 34169498
Alignment:
Q  33 aaacttgcctcagtttttatatcatatgcacactttgcatcattcatgcctctttcaattttagtaacgatatcagaatacaacatcttcgccaccgact 132  Q
    |||| |||||||||||||| |||||||||||||||  |||  |||||||| |||| ||||| || || || | ||  ||  |||||||||||||||||||    
T  34169674 aaacatgcctcagtttttaaatcatatgcacacttcacatttttcatgccgctttgaatttcagcaatgacagcaacatgtaacatcttcgccaccgact 34169575  T
Q  133 tctgtgggtatgcaaattaatattaaaaagaactcaaatttagacaaagaaaataataaaaattgtttgaatctaaagcattg 215  Q
    ||||   ||||  | |||||| ||  ||||||||||||| | ||||||||    ||| ||| ||||||||||| |||||||||    
T  34169574 tctgctagtatagagattaatctt--aaagaactcaaatattgacaaaga----aattaaagttgtttgaatcaaaagcattg 34169498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 34115363 - 34115282
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatctccttctttcggagtatctcataaaattgattcattcat 317  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| | || | || ||||||||||  |||||||| | ||||||    
T  34115363 aaacttgccttggattttgccaaagatctccttctggggtatttactccgtttggagtatctccaaaaattgaatgattcat 34115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 34169470 - 34169426
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatctc 280  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||    
T  34169470 aaacttaccttggattttgccaaagatctccttttggggtatctc 34169426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 34091637 - 34091594
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatct 279  Q
    |||||||||||||||||| |||||||||||||||| || |||||    
T  34091637 aaacttgccttggattttacccaagatctccttttcgggtatct 34091594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 34115547 - 34115496
Alignment:
Q  31 aaaaacttgcctcagtttttatatcatatgcacactttgcatcattcatgcc 82  Q
    |||||||||||||||| |||| |||||| |||||||| |||| |||||||||    
T  34115547 aaaaacttgcctcagtctttaaatcataggcacacttcgcattattcatgcc 34115496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 34091845 - 34091807
Alignment:
Q  29 ataaaaacttgcctcagtttttatatcatatgcacactt 67  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  34091845 ataaaaacttgcctcagtttttatatcaaacgcacactt 34091807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 34109362 - 34109301
Alignment:
Q  236 aaacttgccttggattttgcccaagatctccttttgggatatctccttctttcggagtatct 297  Q
    ||||||||||| |||||| |||||||||||||||| || ||||| || |||| || ||||||    
T  34109362 aaacttgccttagattttacccaagatctccttttcgggtatctactccttttggggtatct 34109301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 34119998 - 34119957
Alignment:
Q  238 acttgccttggattttgcccaagatctccttttgggatatct 279  Q
    |||||||||||||||| |||||||||||||||| || |||||    
T  34119998 acttgccttggattttacccaagatctcctttttgggtatct 34119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 34147159 - 34147127
Alignment:
Q  238 acttgccttggattttgcccaagatctcctttt 270  Q
    |||||||||||||||| ||||||||||||||||    
T  34147159 acttgccttggattttacccaagatctcctttt 34147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 34159775 - 34159743
Alignment:
Q  238 acttgccttggattttgcccaagatctcctttt 270  Q
    |||||||||||||||| ||||||||||||||||    
T  34159775 acttgccttggattttacccaagatctcctttt 34159743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 6976 - 6928
Alignment:
Q  231 caaagaaacttgccttggattttgcccaagatctccttttgggatatct 279  Q
    |||| |||||||||||||||||| |||||||||||||||| || |||||    
T  6976 caaaaaaacttgccttggattttacccaagatctccttttcgggtatct 6928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 7179 - 7141
Alignment:
Q  29 ataaaaacttgcctcagtttttatatcatatgcacactt 67  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  7179 ataaaaacttgcctcagtttttatatcaaacgcacactt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University