View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_high_34 (Length: 341)

Name: NF1412_high_34
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_high_34
NF1412_high_34
[»] chr4 (4 HSPs)
chr4 (17-86)||(2309662-2309731)
chr4 (260-306)||(46971942-46971988)
chr4 (100-160)||(2309782-2309842)
chr4 (196-240)||(2312622-2312666)
[»] chr3 (1 HSPs)
chr3 (263-306)||(16789693-16789736)
[»] chr1 (1 HSPs)
chr1 (247-306)||(40917708-40917767)
[»] chr7 (1 HSPs)
chr7 (256-306)||(13770657-13770707)
[»] scaffold0007 (1 HSPs)
scaffold0007 (254-306)||(225311-225363)
[»] chr6 (1 HSPs)
chr6 (254-294)||(2153942-2153982)
[»] chr2 (1 HSPs)
chr2 (254-306)||(23354695-23354747)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 2309662 - 2309731
Alignment:
Q  17 gaacttagaaagtgtttgatatgatattctctttttatccataagtttcttccatgagtgaggtgtcgaa 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2309662 gaacttagaaagtgtttgatatgatattctctttttatccataagtttcttccatgagtgagttgtcgaa 2309731  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 46971988 - 46971942
Alignment:
Q  260 aatcggacatgacacggataccgatacgccgacacagataataattt 306  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  46971988 aatcggacatgacacggatactgatactccgacacggataataattt 46971942  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 2309782 - 2309842
Alignment:
Q  100 caatgttcttgagaatctaactccttttgtttgactcaatcccgttgaattttaatgtgat 160  Q
    |||||||  |||||||||| | |||| |||||||||||| ||| |||||||||||||||||    
T  2309782 caatgttggtgagaatctagccccttgtgtttgactcaaccccattgaattttaatgtgat 2309842  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 2312622 - 2312666
Alignment:
Q  196 tagtaaaatgggtatggtataaaaaataggaatcaagaatgtgta 240  Q
    |||||||||  |||||||||||||||||||| | |||||||||||    
T  2312622 tagtaaaattcgtatggtataaaaaataggagttaagaatgtgta 2312666  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 16789736 - 16789693
Alignment:
Q  263 cggacatgacacggataccgatacgccgacacagataataattt 306  Q
    |||| |||||||||||||||| | ||||||||||||||||||||    
T  16789736 cggagatgacacggataccgagatgccgacacagataataattt 16789693  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 40917708 - 40917767
Alignment:
Q  247 tatgaaccacggaaatcggacatgacacggataccgatacgccgacacagataataattt 306  Q
    |||||| |||||| | |||||| ||||||||||| || |||||||||||| |||||||||    
T  40917708 tatgaaacacggacaccggacacgacacggatactgacacgccgacacagctaataattt 40917767  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 13770657 - 13770707
Alignment:
Q  256 cggaaatcggacatgacacggataccgatacgccgacacagataataattt 306  Q
    |||| |||||||| |||||||| || ||||||||||||||| |||||||||    
T  13770657 cggacatcggacacgacacggacactgatacgccgacacagctaataattt 13770707  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 225363 - 225311
Alignment:
Q  254 cacggaaatcggacatgacacggataccgatacgccgacacagataataattt 306  Q
    |||||| | |||||| |||||||| || || ||||||||||||||||||||||    
T  225363 cacggacaccggacacgacacggacactgacacgccgacacagataataattt 225311  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 2153982 - 2153942
Alignment:
Q  254 cacggaaatcggacatgacacggataccgatacgccgacac 294  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  2153982 cacggacatcggacatgacacggacaccgacacgccgacac 2153942  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 23354747 - 23354695
Alignment:
Q  254 cacggaaatcggacatgacacggataccgatacgccgacacagataataattt 306  Q
    |||||| | ||||||||||||||| ||||| | || |||||||||||||||||    
T  23354747 cacggacaccggacatgacacggacaccgacatgctgacacagataataattt 23354695  T

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