View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_35 (Length: 338)
Name: NF1412_high_35
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8070915 - 8070593
Alignment:
| Q |
1 |
aagtagataaataataatacctctggatagttgtcaccgtcaaccttctgaatgcgagtaacaagttccctagcatgtttgctgaagcttttaagcccct |
100 |
Q |
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| T |
8070915 |
aagtagataaataataatacctctggatagttgtcaccatcaaccttctgaatgcgagtaacaagttccctagcatgtttgctgaagcttttaagcccct |
8070816 |
T |
|
| Q |
101 |
gtgacattgaaacaatatttatctcaagttgcataaaaattttcatgttaaatataattaactagctgttaactatttttatgcataccactccctccac |
200 |
Q |
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| T |
8070815 |
gtgacattgaaacaatatttatctcaagttgcataaaaaatttcatgttaaatataattaactaactgttaactatttttatgcataccactccctccac |
8070716 |
T |
|
| Q |
201 |
atccaggatagtcgtactttgatcgatgtgcttcttggcagcaatggaacaagccgcaaactttacatcgaatgtcctctcaaactcctttacatggtat |
300 |
Q |
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| T |
8070715 |
atccaggatagtcgtactttgatcgatgtgcttcttggcagcaatggaacaagccgcaaactttacatcgaatgtcctctcaaactcctttacatggtat |
8070616 |
T |
|
| Q |
301 |
ttgatatagcgatccatggttgt |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
8070615 |
ttgatatagcgatccatggttgt |
8070593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 32616911 - 32617048
Alignment:
| Q |
186 |
taccactccctccacatccaggatagtcgtactttgatcgatgtgcttcttggcagcaatggaacaagccgcaaactttacatcgaatgtcctctcaaac |
285 |
Q |
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| T |
32616911 |
taccactccttgcacatccaaaatggtggtgctttgatctatgtgtttctttgcagcaatggtacaggctggaaacttgagatcaaatgttctctcaaat |
32617010 |
T |
|
| Q |
286 |
tcctttacatggtatttgatatagcgatccatggttgt |
323 |
Q |
| |
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| T |
32617011 |
tccttgacatggtatttgacatatcgatccattgttgt |
32617048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 26639080 - 26638967
Alignment:
| Q |
175 |
atttttatgcataccactccctccacatccaggatagtcgtactttgatcgatgtgcttcttggcagcaatggaacaagccgcaaactttacatcgaatg |
274 |
Q |
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||||| || ||||||||||| | ||||||| |||||| || |||||||| ||||||||||| || ||||| |||||||| | | ||| |||| | ||| |
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| T |
26639080 |
attttgatacataccactccttggacatccaagatagttgtgctttgatcaatgtgcttctttgctgcaattgaacaagcaggcatcttaacattggatg |
26638981 |
T |
|
| Q |
275 |
tcctctcaaactcc |
288 |
Q |
| |
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|| ||||||||||| |
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| T |
26638980 |
tcttctcaaactcc |
26638967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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