View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_40 (Length: 322)
Name: NF1412_high_40
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 3138026 - 3138199
Alignment:
| Q |
134 |
atgaaatgatagaaatgtagcattagacttttaggaattaatgtcatagtatcaccatttacccaacttatgattatatgattttgtggacccgtgtgga |
233 |
Q |
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| T |
3138026 |
atgaaatgatagaaatatagcattagacttttaggaattaatgtcatagtatcaccatttacctaacttatgattagatgattttgtggacccatgtgga |
3138125 |
T |
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| Q |
234 |
agccacactcaccatcacacatgctacaaggggacgtataggttgacatttataaatgtctatatacatataat |
307 |
Q |
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| T |
3138126 |
agccacactcaccatcacacatgctacaaggggacgtataggttgacatttataaatgtctatatacatataat |
3138199 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3137906 - 3137985
Alignment:
| Q |
1 |
taataacacttatggacttcatgctattaattatggttttattaataaaaaggaaatgtctgcttttggctccaatgaac |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3137906 |
taataacacttatggacttcatgctattaattatggttttattaataaaaaggaaatgtctgcttttggctccaatgaac |
3137985 |
T |
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