View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_high_47 (Length: 291)
Name: NF1412_high_47
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 52248093 - 52248338
Alignment:
| Q |
17 |
cactgagtagacgacaaagtaggagagaccattactgatgatattgttgatggagtgagtggtggcgtagccggtgaagaagaagaagtagaaaccacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52248093 |
cactgagtagacgacaaagtaggagagaccattactgatgatattgttgatggagtgagtggtggcgtagccggtgaagaagaagaagtagaaaccacaa |
52248192 |
T |
|
| Q |
117 |
caacagcnnnnnnnnnnnnnnnnnnnctctcattcaccattccatcgcagaaccttctgtgcgtaacaaaattatccttcctataaacaaatagataaca |
216 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52248193 |
caacaacattattattattattattactctcattcaccattccatcgcagaaccttctgtgcgtaacaaaattatccttcctataaacaaataaataaca |
52248292 |
T |
|
| Q |
217 |
ttaacaaaacagaaaatgatcaatattttgagagataattaaagat |
262 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52248293 |
ttaacaaaacagaaaataatcaatattttgagagataattaaagat |
52248338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University