View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_5 (Length: 518)
Name: NF1412_high_5
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 24544387 - 24544876
Alignment:
| Q |
18 |
ttgggctatttttcatttgagagggaatattcttcttatttagaccacagatttggacacttcnnnnnnngattacatttggaaacttctttttgataca |
117 |
Q |
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| T |
24544387 |
ttgggctatttttcatttgagagggaatattcttcttatttagaccacagatttggacacttctttttttgattacatttggaaacttctttttgataca |
24544486 |
T |
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| Q |
118 |
cacaaaagaaattaaatattactattttttagtgtatatccaaataatgtgcttagctctttgtgtttacacaagaaaaaaccttctttgagaggtttat |
217 |
Q |
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| T |
24544487 |
cactaaagaaattaaatattactattttttagtgtatatccaaataatgtgcttagctctttgtgtttacacaagaaaaaaccttctttgagaggtttat |
24544586 |
T |
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| Q |
218 |
attaaatgcacttttaattgtatacacgttcttgtctttttcaagcgtcgtgaacagatgattttgccactacaaataattacgtgaatcatatggaaca |
317 |
Q |
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| T |
24544587 |
attaaatgcacttttaattgtatacacgttcttgtctttttcaagcgtcgtgaacagatgattttgccactacaaataattacgtgaatcatatggaaga |
24544686 |
T |
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| Q |
318 |
atccaatagttgcaagaaaaacgaggtacattgaacttaagcaataagccaaggttgaagggaacaattatggtaaatatc-aaattatgaaacaatgag |
416 |
Q |
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| T |
24544687 |
attcaataattgcaagaaaaacgaggtacattgaacttaagcaataagccaaggttgaagggaacaattatggtaaatatcaaaattatgaaacaataag |
24544786 |
T |
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| Q |
417 |
ccaaggttgcagcgacattgaacttattctgatgattctggttggtttaatgtggaaatatttctgtacacgttaaatttggaatttatt |
506 |
Q |
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| T |
24544787 |
ccaaggttgaagggacattgaacttattcggatgattctggttggtttaatgtggaaatatttttgtacacattaaatttggaatttatt |
24544876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 507
Target Start/End: Original strand, 24533869 - 24533964
Alignment:
| Q |
415 |
agccaaggttgcagcgacattgaacttattctgatgattctggttggtt---taatgtggaaatatttctgtacacgttaaatttggaatttattg |
507 |
Q |
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|||||| ||||||| ||||||||||||| |||||||||||| || |||| ||||| ||||||||| ||| | |||||||||||||||||||| |
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| T |
24533869 |
agccaatgttgcagggacattgaacttactctgatgattctagtcggttgcaaaatgttgaaatatttgtgtgcgtgttaaatttggaatttattg |
24533964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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