View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_52 (Length: 269)
Name: NF1412_high_52
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 45915536 - 45915725
Alignment:
| Q |
64 |
cctagagagtaacggtatccaacaaatgtcaaggtaccaaagaatgtttgccttagacaatcaccctctcttaaatttccaatcacttgattaaaaatta |
163 |
Q |
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| T |
45915536 |
cctagagagta-cggtatccaacaaatgtcaaggtaccaaagaatgtttgccttagacaatgaccctctcttaaatttccaatcatttgattaaaaatta |
45915634 |
T |
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| Q |
164 |
ttatcatcatacaaacattccagctccggagaaattaaatttctttctttggacagcttgccatgatgatattcctagaaaggtaattttt |
254 |
Q |
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| T |
45915635 |
ttatcatcatacaaacattccagctccggagaaattaaatttctttctttggacagcttgccatgatgatattcctagaaagataattttt |
45915725 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 7495940 - 7495982
Alignment:
| Q |
106 |
aatgtttgccttagacaatcaccctctcttaaatttccaatca |
148 |
Q |
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| T |
7495940 |
aatgtttgccttagaccagcatcctctcttaaatttccaatca |
7495982 |
T |
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