View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_58 (Length: 253)
Name: NF1412_high_58
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 52513316 - 52513106
Alignment:
| Q |
19 |
tcacctggaactgtgttcctttcaatactgtactagagattccattcacttctataccttattgctagctaatactcatcttgggattttcaaccaacac |
118 |
Q |
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| T |
52513316 |
tcacctggaactgtgttcctttcaatactgtactagagattccattcacttctataccttattgctagctaatactcatcttgggattttcaaccaacac |
52513217 |
T |
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| Q |
119 |
ctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaatttttatcattatggaatctacaaatctccatcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52513216 |
ctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaa-ttttatcattatggaatctacaaatctccatcat |
52513118 |
T |
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| Q |
219 |
ctccaagaccaa |
230 |
Q |
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|||||||||||| |
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| T |
52513117 |
ctccaagaccaa |
52513106 |
T |
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