View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_61 (Length: 251)
Name: NF1412_high_61
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 38744455 - 38744270
Alignment:
| Q |
51 |
atatctgcaggctaccagaattattatatacaataataaaatgttcaagtggcatatagataatgccacaaattcacctgtccgttgctgttgctctaca |
150 |
Q |
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| T |
38744455 |
atatctgcaggcttccagaattattatatacaataataaaatgttcaagtggcatatagataatgccacaaattcacctgtccgttgctgttgctctaca |
38744356 |
T |
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| Q |
151 |
caaatatggcactagagtttactcaataagacacaacagaaaacctccaacacacttgagtcatcttttgtaccctacttctcttt |
236 |
Q |
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| T |
38744355 |
caaatatggcactagagtttactcaataagacacaacagaaaacctccaacacacttgagtcatcttttgtaccctacttctcttt |
38744270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 38740616 - 38740395
Alignment:
| Q |
10 |
taatacttttaattaattcctttaatatctgcaa--tcttcatatatctgcaggctaccagaattattatatacaataataaaatgttcaagtg------ |
101 |
Q |
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| T |
38740616 |
taatacttttaattaattcctttagtatctctaaaatcttcatatatttgcaggcttccagaatcattttacacaataataaaatgcttaagtgctgcgc |
38740517 |
T |
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| Q |
102 |
-gcatatagataatgccacaaattcacctgtccgttgctgttgctctacacaaatatggcactagagtttactcaataagacacaacagaaaacctccaa |
200 |
Q |
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| T |
38740516 |
cggagat-gata-tgtcacaaattaccctgtccgttgctcatgacctatataaatgtggcactagagttcactcaataggacacaacagaaaacctccaa |
38740419 |
T |
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| Q |
201 |
cacacttgagtcatcttttgtacc |
224 |
Q |
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| T |
38740418 |
caaatttgagtcatcttttgtacc |
38740395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 38744480 - 38744447
Alignment:
| Q |
9 |
ataatacttttaattaattcctttaatatctgca |
42 |
Q |
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| T |
38744480 |
ataatacttttaattaattcctttaatatctgca |
38744447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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