View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_high_64 (Length: 250)

Name: NF1412_high_64
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_high_64
NF1412_high_64
[»] scaffold0455 (2 HSPs)
scaffold0455 (2-184)||(7542-7724)
scaffold0455 (210-250)||(1898-1938)
[»] chr6 (4 HSPs)
chr6 (2-184)||(28128955-28129137)
chr6 (83-190)||(18757941-18758048)
chr6 (210-250)||(28123613-28123653)
chr6 (81-150)||(22032738-22032807)
[»] chr8 (5 HSPs)
chr8 (2-184)||(17051426-17051608)
chr8 (16-184)||(17229933-17230101)
chr8 (195-250)||(17057298-17057353)
chr8 (195-250)||(17590872-17590927)
chr8 (203-250)||(17225886-17225933)
[»] scaffold0534 (3 HSPs)
scaffold0534 (2-184)||(5088-5270)
scaffold0534 (2-119)||(9612-9729)
scaffold0534 (210-250)||(8789-8829)
[»] chr1 (2 HSPs)
chr1 (2-184)||(19850247-19850429)
chr1 (195-250)||(19846140-19846195)
[»] scaffold0581 (1 HSPs)
scaffold0581 (57-184)||(4097-4224)
[»] chr5 (2 HSPs)
chr5 (57-184)||(30407466-30407593)
chr5 (2-77)||(25192132-25192207)
[»] chr4 (2 HSPs)
chr4 (57-184)||(54758126-54758253)
chr4 (42-190)||(9553474-9553622)
[»] scaffold0208 (1 HSPs)
scaffold0208 (62-184)||(19379-19501)
[»] chr2 (3 HSPs)
chr2 (2-119)||(28050357-28050474)
chr2 (72-150)||(21157623-21157701)
chr2 (81-150)||(44342889-44342958)
[»] chr3 (5 HSPs)
chr3 (42-190)||(1375263-1375411)
chr3 (42-190)||(17622679-17622827)
chr3 (42-190)||(17629862-17630010)
chr3 (72-150)||(11980742-11980820)
chr3 (81-150)||(8059677-8059746)
[»] chr7 (6 HSPs)
chr7 (42-190)||(10566504-10566644)
chr7 (42-190)||(10569290-10569430)
chr7 (42-148)||(42774011-42774117)
chr7 (195-231)||(10564903-10564939)
chr7 (2-42)||(10566422-10566462)
chr7 (2-42)||(10569472-10569512)
[»] scaffold0221 (1 HSPs)
scaffold0221 (48-190)||(23556-23698)
[»] scaffold0104 (1 HSPs)
scaffold0104 (203-250)||(38801-38848)
[»] scaffold0144 (1 HSPs)
scaffold0144 (72-150)||(14612-14690)
[»] scaffold0337 (1 HSPs)
scaffold0337 (195-231)||(14002-14038)
[»] scaffold0065 (1 HSPs)
scaffold0065 (195-231)||(1044-1080)
[»] scaffold0036 (1 HSPs)
scaffold0036 (81-150)||(107769-107838)


Alignment Details
Target: scaffold0455 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 7724 - 7542
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7724 gaggaggagcggaaagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaagaaaatgcaaagcaaagactgaggcataagatgagtatac 7625  T
Q  102 ctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||||||||||| |||||||||||  |||||| ||||||||||||||||||||||| || | |||||||    
T  7624 ctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaacgaaagtggcttt 7542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 1938 - 1898
Alignment:
Q  210 tcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  1938 tcaagtttatgatgaatttttgtataaaggtgtttatgaat 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 28129137 - 28128955
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28129137 gaggaggagcggaaagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaagaaaatgcaaagcaaagactgaggcataagatgagtatac 28129038  T
Q  102 ctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||||||||||| |||||||||||  |||||| ||||||||||||||||||||||| || | |||||||    
T  28129037 ctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaacgaaagtggcttt 28128955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 18758048 - 18757941
Alignment:
Q  83 aggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggct 182  Q
    ||||| |||||||||||| ||||||||||||| |||||| ||||| || ||| ||||||||||||||||||||| ||| |  | |||||||||| |||||    
T  18758048 aggcacaagatgagtatatctaaggtatatgagcttatgcattcagtacatgacaaaagaagaaaagaggagataattgagcttttgaatgacagtggct 18757949  T
Q  183 ttagagga 190  Q
    || |||||    
T  18757948 ttggagga 18757941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 28123653 - 28123613
Alignment:
Q  210 tcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  28123653 tcaagtttatgatgaatttttgtataaaggtgtttatgaat 28123613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 22032738 - 22032807
Alignment:
Q  81 tgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||||| ||| | || ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  22032738 tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaaga 22032807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 17051426 - 17051608
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17051426 gaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatac 17051525  T
Q  102 ctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||||||||||| || |||| |||  |||||| |||||||||||||||||||||||||| | |||||||    
T  17051526 ctaaggtatatgatcttatgaattcagtacatggaaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggcttt 17051608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 17230101 - 17229933
Alignment:
Q  16 agaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgat 115  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||| |||||||||||||    
T  17230101 agaagaggctaaaagcaaagaaaagaatgaaggaagttcatatgaggaaaatgcaaaccaaaaactgagacataagatgagtatacttaaggtatatgat 17230002  T
Q  116 cttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    |||||||||||| |||||||||||  |||||| |||||||||||||| ||||||||||| | |||||||    
T  17230001 cttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaatgtattgaatgaaagtggcttt 17229933  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 17057298 - 17057353
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    ||||||| || ||| |||||||||||||||| |||||||| |||||||||||||||    
T  17057298 atttttgaatctgtttcaagtttatgatgaagttttgtattaagatgtttatgaat 17057353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 17590927 - 17590872
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    ||||||| || ||| |||||||||||||||| |||||||| |||||||||||||||    
T  17590927 atttttgaatctgtttcaagtttatgatgaagttttgtattaagatgtttatgaat 17590872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 17225933 - 17225886
Alignment:
Q  203 atttgtatcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    |||||| |||||||||| ||| ||||||||||| ||||||||||||||    
T  17225933 atttgtgtcaagtttataatggatttttgtatatagatgtttatgaat 17225886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 5088 - 5270
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5088 gaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatac 5187  T
Q  102 ctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||||||||||| || |||| |||  |||||| ||||||||||||||| |||||||||| | |||||||    
T  5188 ctaaggtatatgatcttatgaattcagtacatggaaaacaaagaaaggaggagatcattaacttattgaatgaaagtggcttt 5270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 9729 - 9612
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  9729 gaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagactagtatac 9630  T
Q  102 ctaaggtatatgatctta 119  Q
    ||||||||||||||||||    
T  9629 ctaaggtatatgatctta 9612  T

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Target: scaffold0534; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 8789 - 8829
Alignment:
Q  210 tcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8789 tcaagtttatgatgaatttttgttttaagatgtttatgaat 8829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 19850429 - 19850247
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    |||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||     
T  19850429 gaggaggagcggaaagaagaggctaaaagtaaagaaaataatgaaggaagttcagatgaggaaaatgcaaagtaacgactgaggcataagatgagtatat 19850330  T
Q  102 ctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcattaacgtattgaatgacactggcttt 184  Q
    ||| |||||||||||||||||||||| |||||||||||  |||||| |||||||||||||||||||||||||| | |||||||    
T  19850329 ctatggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcattaacgtattgaatgaaagtggcttt 19850247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 19846195 - 19846140
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19846195 atttctggatttgtatcaagtttaagatgaatttttgtataaagatgtttatgaat 19846140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 4224 - 4097
Alignment:
Q  57 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||| || |||||    
T  4224 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat 4125  T
Q  157 cattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||| | |||||||    
T  4124 cattaacgtattgaatgaaagtggcttt 4097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 30407466 - 30407593
Alignment:
Q  57 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||| || |||||    
T  30407466 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat 30407565  T
Q  157 cattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||| | |||||||    
T  30407566 cattaacgtattgaatgaaagtggcttt 30407593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 25192132 - 25192207
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaa 77  Q
    |||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  25192132 gaggaggagcggaaagaagaggctaaaagcaaagaaaagaatgatggaagttcagatgaggaaaatgcaaagcaaa 25192207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 54758253 - 54758126
Alignment:
Q  57 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||| || |||||    
T  54758253 atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat 54758154  T
Q  157 cattaacgtattgaatgacactggcttt 184  Q
    |||||||||||||||||| | |||||||    
T  54758153 cattaacgtattgaatgaaagtggcttt 54758126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 9553474 - 9553622
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||| ||||| |||||||  | ||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| || ||||||||||    
T  9553474 atgaaggaagttcggatgatgaaaatgtgatgcaaagaatgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagtacatggcaaaag 9553573  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
    ||||||||| ||||| ||| |  | |||||||||| ||||||| |||||    
T  9553574 aagaaaagatgagataattgagcttttgaatgacaatggctttggagga 9553622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 19379 - 19501
Alignment:
Q  62 gaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaagaggagatcatta 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||    
T  19379 gaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcatta 19478  T
Q  162 acgtattgaatgacactggcttt 184  Q
    ||||||||||||| | |||||||    
T  19479 acgtattgaatgaaagtggcttt 19501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 28050474 - 28050357
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatac 101  Q
    ||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  28050474 gaggaggagcgaaaagaagaggctaaaagcaaagaaaagaatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagactagtatac 28050375  T
Q  102 ctaaggtatatgatctta 119  Q
    ||||||||||||||||||    
T  28050374 ctaaggtatatgatctta 28050357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 21157623 - 21157701
Alignment:
Q  72 agcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||| || ||||||| ||| | || ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  21157623 agcaacgattgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaaga 21157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 44342889 - 44342958
Alignment:
Q  81 tgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||||| ||| | || ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  44342889 tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaaga 44342958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 1375263 - 1375411
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  1375263 atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcaatacatggcaaaag 1375362  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
    ||||||||||||||| ||| |  | |||||||||| ||||||| |||||    
T  1375363 aagaaaagaggagataattgagcttttgaatgacaatggctttggagga 1375411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 17622679 - 17622827
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| | |||| ||||| || |||| |||||    
T  17622679 atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcctatgcattcagtacatggaaaaag 17622778  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
    ||||||||||||||| ||| |  | |||||||||| ||||||| |||||    
T  17622779 aagaaaagaggagataattgagcttttgaatgacagtggctttggagga 17622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 17629862 - 17630010
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| | |||| ||||| || |||| |||||    
T  17629862 atgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcctatgcattcagtacatggaaaaag 17629961  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
    ||||||||||||||| ||| |  | |||||||||| ||||||| |||||    
T  17629962 aagaaaagaggagataattgagcttttgaatgacagtggctttggagga 17630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 11980820 - 11980742
Alignment:
Q  72 agcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||| || ||||||| ||| | || ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  11980820 agcaacgattgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaaga 11980742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 8059746 - 8059677
Alignment:
Q  81 tgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||||| ||| | || ||||||||||| ||||| |||| ||| |||||| |||| ||||||||||||||    
T  8059746 tgaggcacaagcttagcatacctaaggtctatgaccttacgaagtcaatagatggaaaaagaagaaaaga 8059677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 10566504 - 10566644
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||         
T  10566504 atgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaactcagtaaatggc----- 10566598  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
       |||||| ||||| ||||||||||||||||||| ||||||| |||||    
T  10566599 ---aaaagacgagataattaacgtattgaatgacagtggctttggagga 10566644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 10569430 - 10569290
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||       
T  10569430 atgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaactcagtaaatggcaa--- 10569334  T
Q  142 aagaaaagaggagatcattaacgtattgaatgacactggctttagagga 190  Q
         |||| ||||| ||||||||||||||||||| ||||||| |||||    
T  10569333 -----aagacgagataattaacgtattgaatgacagtggctttggagga 10569290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 42774011 - 42774117
Alignment:
Q  42 atgaaggaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaag 141  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  42774011 atgaaggaagttcaaatgatgaaaatgtcaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaattcagtaaatggcaaaag 42774110  T
Q  142 aagaaaa 148  Q
    |||||||    
T  42774111 aagaaaa 42774117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 10564939 - 10564903
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttg 231  Q
    |||||||||||||||||||||||||||||||||||||    
T  10564939 atttttggatttgtatcaagtttatgatgaatttttg 10564903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10566422 - 10566462
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaa 42  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  10566422 gaggaggagcggaaagaagaggctaaaagtaaagaaaagaa 10566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10569512 - 10569472
Alignment:
Q  2 gaggaggagcagagagaagaggctaaaagtaaagaaaagaa 42  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  10569512 gaggaggagcggaaagaagaggctaaaagtaaagaaaagaa 10569472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 23556 - 23698
Alignment:
Q  48 gaagttcagatgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaa 147  Q
    |||||||| |||| ||||||||||| |||||||||||| | ||||||||||||| |||||||||||| |||||| ||| | || || |||||||||||||    
T  23556 gaagttcaaatgatgaaaatgcaaaacaaagactgaggtacaagatgagtatacgtaaggtatatgagcttatgcattaagtacattgcaaaagaagaaa 23655  T
Q  148 agaggagatcattaacgtattgaatgacactggctttagagga 190  Q
    | ||||||| ||| |  | |||||||||| ||||||| |||||    
T  23656 ataggagataattgagcttttgaatgacagtggctttggagga 23698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 38801 - 38848
Alignment:
Q  203 atttgtatcaagtttatgatgaatttttgtataaagatgtttatgaat 250  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  38801 atttgtgtcaagtttatgatgaatttttgtataaagatgtttatgaat 38848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 14612 - 14690
Alignment:
Q  72 agcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||| || ||||||| ||| | || ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  14612 agcaacgattgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaaga 14690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 14038 - 14002
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttg 231  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14038 atttctggatttgtatcaagtttatgatgaatttttg 14002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 1080 - 1044
Alignment:
Q  195 atttttggatttgtatcaagtttatgatgaatttttg 231  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1080 atttctggatttgtatcaagtttatgatgaatttttg 1044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 107838 - 107769
Alignment:
Q  81 tgaggcataagatgagtatacctaaggtatatgatcttatgaattcaataaatggcaaaagaagaaaaga 150  Q
    ||||||| ||| | || ||||||||||| ||||| || ||||| |||||| |||| ||||||||||||||    
T  107838 tgaggcacaagcttagcatacctaaggtctatgacctaatgaagtcaatagatggaaaaagaagaaaaga 107769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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