View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_68 (Length: 249)
Name: NF1412_high_68
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 52807359 - 52807115
Alignment:
| Q |
4 |
gagtgagatgaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactc |
103 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807359 |
gagtgacaagaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactc |
52807260 |
T |
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| Q |
104 |
tttaagctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807259 |
tttaagctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgta |
52807160 |
T |
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| Q |
204 |
tatatcaagtgatgcgctcaggaggttgtgcattgcagcagaccc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807159 |
tatatcaagtgatgcgctcaggaggttgtgcattgcagcagaccc |
52807115 |
T |
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