View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_72 (Length: 247)
Name: NF1412_high_72
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_72 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22883616 - 22883377
Alignment:
| Q |
1 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22883616 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
22883517 |
T |
|
| Q |
101 |
ttcatcaataatatttggcggaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22883516 |
ttcatcaataatatttggcgcaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
22883417 |
T |
|
| Q |
201 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22883416 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
22883377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22901546 - 22901307
Alignment:
| Q |
1 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22901546 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
22901447 |
T |
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| Q |
101 |
ttcatcaataatatttggcggaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
200 |
Q |
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| T |
22901446 |
ttcatcaataatatttggcgcaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
22901347 |
T |
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| Q |
201 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22901346 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
22901307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22983199 - 22983438
Alignment:
| Q |
1 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
100 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
22983199 |
ttaattattccatatgggaagatctttttattgacttcacctttatttctccatcatggtaatgttacctggaagattagtctctgacatggatcatgct |
22983298 |
T |
|
| Q |
101 |
ttcatcaataatatttggcggaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
200 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22983299 |
ttcatcaatattatttggcgcaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
22983398 |
T |
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| Q |
201 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22983399 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
22983438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23805209 - 23804970
Alignment:
| Q |
1 |
ttaattattccatatgggaagatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgct |
100 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
23805209 |
ttaattattccatatgggaagatctttttattgacttcacctttatttctccatcatggtaatgttacctggaagattagtctctgacatggatcatgct |
23805110 |
T |
|
| Q |
101 |
ttcatcaataatatttggcggaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
200 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23805109 |
ttcatcaatagtatttggcgcaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttag |
23805010 |
T |
|
| Q |
201 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23805009 |
tgcaatacctagaatttgttcaccaccaaccttccctttg |
23804970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 22916469 - 22916246
Alignment:
| Q |
21 |
gatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22916469 |
gatctttctattgacttcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcg |
22916370 |
T |
|
| Q |
121 |
gaaactgttcaagttgagaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttc----tttagtgcaatacctagaatt |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
22916369 |
caaactgttcaagttgagaatgagcactttctaccatcctaaaatagatggataaaatgaagtcttgaatctttctatatatagtgcaatacctagaatt |
22916270 |
T |
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| Q |
217 |
tgttcaccaccaaccttccctttg |
240 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
22916269 |
tgttcaccaccaaccttccctttg |
22916246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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