View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_75 (Length: 245)
Name: NF1412_high_75
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_75 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27567786 - 27567557
Alignment:
| Q |
1 |
acagctccctggttgtaatattttacttaaggtctcttttgacgactcatatgacatgattttgtaactttgttgtaaagagagaactctgaaatctttt |
100 |
Q |
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| T |
27567786 |
acagctccctggttgtaagattttacttaaggtctcttttgatgactcatatgacatgattttgtaactttgttgtaaagagagaactctgaaatctttt |
27567687 |
T |
|
| Q |
101 |
gtaggtttcaaaatatatctgacttttgaattatagttattgagtatatggtatagtttattagcnnnnnnnnggataagaagaaagaatatatggcata |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
27567686 |
gtaggtttcaaaatatatccgacttttgaattatagttattgagtatatggtatagtttatcagcaaaaaaaa-gataagaagaaagaatatatggcata |
27567588 |
T |
|
| Q |
201 |
gttaaagtaggtattctatttgaaagaaggt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27567587 |
gttaaagtaggtattctatttgaaagaaggt |
27567557 |
T |
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