View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_80 (Length: 244)
Name: NF1412_high_80
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_80 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24697320 - 24697557
Alignment:
| Q |
1 |
caattcctcctcttggtgaatataatccaaatccaagtgcctgcccctctcattcacaagaaagatactgttaagcaaaccacataaactcctccacacc |
100 |
Q |
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| T |
24697320 |
caattccacctcttggtgaatataatccaaatccaagtgcctgcccctctcattcacaagaaagatactgttaagcaaaccacataaactcctccacacc |
24697419 |
T |
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| Q |
101 |
aagcttaaattaaagttactatattcttcatgatgctcagggaatcttgcttttatgataactcctgcagttaggagcctcagagcacaacgattcagtt |
200 |
Q |
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| T |
24697420 |
aagcttaaattaaagttactatattcttcatgatgctcagggaatcttgcttttatgataactcctgcagttaggagcctcagagcacaacgattcagtt |
24697519 |
T |
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| Q |
201 |
taagctggtgctgctgaggagcttccctaaattgaaac |
238 |
Q |
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| T |
24697520 |
taagctggtgctgctgaggagcgtccctaaattgaaac |
24697557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 24727379 - 24727446
Alignment:
| Q |
147 |
ttgcttttatgataactcctgcagttaggagcctcagagcacaacgattcagtttaagctggtgctgc |
214 |
Q |
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| T |
24727379 |
ttgcttttatggtaactcctgcagttaggagcctcagagcacagcgtttcagtttaagctgctgctgc |
24727446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 24537258 - 24537205
Alignment:
| Q |
151 |
ttttatgataactcctgcagttaggagcctcagagcacaacgattcagtttaag |
204 |
Q |
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| T |
24537258 |
ttttatggcaactcctgcagttaggagtctcagagcacatcgattcagtttaag |
24537205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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