View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_high_9 (Length: 484)
Name: NF1412_high_9
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 41723003 - 41722541
Alignment:
| Q |
17 |
aggaacaactttgttcataatcatatgaaaatgtttcaacatttagttcattgttttgaatgaaagtttgatgtgtgccaatttggtggcggaatggaat |
116 |
Q |
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| T |
41723003 |
aggaacaactttgttcataatcatatgaaaatgtttcaacatttagttcattgttttgaatgaaagtttgatgtgtgccaatttggtggcggaatggaat |
41722904 |
T |
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| Q |
117 |
gtgactactagcttgccattaccactgccttaggcaatttttggtgaatgcacctacacttttggggcactgtgattttataggtaggtcatctacacgt |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41722903 |
gtgactactagcttgccattaccactaccttaggcaatttttggtgaatgcacctacacttttggggcactgtgattttataggtaggtcatatacacgt |
41722804 |
T |
|
| Q |
217 |
attgtcttccaacatcaactattattgaaaaatgataactcttgattatgcaatattagctttatttttaaattggatatcattggcttgaaagtgtcac |
316 |
Q |
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| T |
41722803 |
attgtcttccaacatcaactattattgaaaaatgataactcttgattatgcaatattagctttatttttaaaatggatatcattggcttgaaagtgtcac |
41722704 |
T |
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| Q |
317 |
aattttacattttaacccatttttgttgtgaaatagtgaaaaagagctcttcacctcatccctttttcatgaaagacgtggtagctaatttggagcatca |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41722703 |
agttttacattttaacccatttttgttgtgaaatagtgaaaaagagctcttcacctcatccctttttcatgaaagacgtggtagctaatttggagcatca |
41722604 |
T |
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| Q |
417 |
actcaactaatttgaaagtgacttgaataagaaataaatgaaatcatatcgctctctgctcct |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41722603 |
actcaactaatttgaaagtgacttgaataagaaataaatgaaatcatatcgctctctgttcct |
41722541 |
T |
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