View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_102 (Length: 236)
Name: NF1412_low_102
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 30413248 - 30413150
Alignment:
| Q |
1 |
tttgatggttgtttgatgttgagattaagagctctccacaccactaattgtgtcattagaattctgaagtggttccaatgatctcacaatcttttctat |
99 |
Q |
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| T |
30413248 |
tttgatggttgtttgatgttgagattaagagctctccacaccactaattgggtcattagaattctgaagtggttccaatgatctcacaatcttttctat |
30413150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 30412408 - 30412215
Alignment:
| Q |
20 |
tgagattaagagctctccacaccactaattgtgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtc |
119 |
Q |
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| T |
30412408 |
tgagattaagagctccgtactccacctactgtgtcatcggaatgctgaagttgctccagtgatctcacaatctcttgtatttttggtctatattctggtt |
30412309 |
T |
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| Q |
120 |
tttccgacagacattgaatcacaatgtgagctactttcattgcttccgacgacgaatattcaccttctatataatcatccatggcttgagagat |
213 |
Q |
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| T |
30412308 |
tttcagacagacattgaattataatatgagctaatttcattgcatcacgcgatgagtattcaccttctatacgaacatccataacttgagagat |
30412215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 30423531 - 30423417
Alignment:
| Q |
51 |
tgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtctttccgacagacattgaatcacaatgtgagc |
150 |
Q |
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| T |
30423531 |
tgtcattggaatcctgaagttgttccaacgatctcaccacctcgtcaatgtttggtctatatttttgttctgccgacagacatcgaattgcaacatgagc |
30423432 |
T |
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| Q |
151 |
tactttcattgcttc |
165 |
Q |
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| T |
30423431 |
tactttaattgcttc |
30423417 |
T |
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