View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_105 (Length: 235)
Name: NF1412_low_105
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 41890125 - 41889951
Alignment:
| Q |
1 |
tatcaaatatgttcaaagaagctgcaaatcatgtatgaatgttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctca |
100 |
Q |
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| T |
41890125 |
tatcaaatatgttcaaagaagctgcaaatcatgtatgaatgttggttttcttgagttttcatatcaaaataactagttgttaataagattatcttgctca |
41890026 |
T |
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| Q |
101 |
tgtaatcctgaatgtccaattgaagttgatcctagaaagacaatgcattcttctgaaactgcaaggataccaaag |
175 |
Q |
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| T |
41890025 |
tgtaatcctgaatgtccaattgaagttgatcctagaaagacaatgcattcttctgaaactgcaaggataccaaag |
41889951 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 41881725 - 41881632
Alignment:
| Q |
41 |
gttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgtaatcctgaatgtccaattgaagttgatccta |
134 |
Q |
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| T |
41881725 |
gttggttttcttgagttttcatatcagaataactaattgttaatgagattatcttgctaatgtaatcttgaattttgggttgaagttgatccta |
41881632 |
T |
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