View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_106 (Length: 234)
Name: NF1412_low_106
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 950109 - 949921
Alignment:
| Q |
14 |
tatacttctataatgagttgcttaacatgtgttattaatgacacaggttaacattagcttaaaattaaagctaatttttatattaacgtggtttcatcag |
113 |
Q |
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| T |
950109 |
tatacttctataatgagttgcttaacatgtgtcattaatgacacatgttaacattagtttaaaattaaagctaattttta-attaacgtcgtttcatcaa |
950011 |
T |
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| Q |
114 |
attaaagcaactttatttattgcatatagttctggattaatagaatcaagggcctaatttccacatacactaacgcatcatcattgtcac |
203 |
Q |
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| T |
950010 |
attaaagcaactttatttattgcatatagttctggattaatagaatcaagggcctaatttccacatacactaacgcatcatcattgtcac |
949921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 943039 - 942897
Alignment:
| Q |
88 |
tttttatattaacgtggtttcatcagattaaagcaactttatttattgcatatagttctggatt-aatagaatcaagggcctaatttccacatacactaa |
186 |
Q |
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| T |
943039 |
ttttaatattaacgaggtttcatcaaattaaagcaactttatttat-----atagttatagatttaacggacacaagggcctactttccaaatacactaa |
942945 |
T |
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| Q |
187 |
cgcatcatcattgtcacacaaacttgtaagcataaaacataatttaac |
234 |
Q |
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| T |
942944 |
tgaatcatcattgttacacaaacttgtaagcataaaacataatttaac |
942897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 961019 - 960966
Alignment:
| Q |
74 |
aaaattaaagctaatttttatattaacgtggtttcatcagattaaagcaacttt |
127 |
Q |
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| T |
961019 |
aaaattaaagctaattctcacattaacgaggtttcatcaaattaaagcaacttt |
960966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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