View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_107 (Length: 234)
Name: NF1412_low_107
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_107 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2855392 - 2855613
Alignment:
| Q |
1 |
catcttcttagactaaaataacaccttaacaaaatttgaaccttgcataaagggtcatagaattctacatattcaactannnnnnn-gagttttgagtat |
99 |
Q |
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| T |
2855392 |
catcttcttagactaaaataacaccttaacaaaatttgaaccttgcataaagggtcatagaattctacatattcaactattttttttgagttttgagtat |
2855491 |
T |
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| Q |
100 |
atctgcaaacatggtttttcgccaacttgtttatcttattgcagaggaaaacacattaaagaatgatgaaagcaactcaactttgtttggtttaatagat |
199 |
Q |
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| T |
2855492 |
atctgcaaacatggtttttcgccaacttgtttatcttattgcagaggaaaacacattacagaatgatgaaagcaactcaactttgtttggtttgatagat |
2855591 |
T |
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| Q |
200 |
tttttcatgtattcaatgttct |
221 |
Q |
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| T |
2855592 |
tttttcatgtattcaatgttct |
2855613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 2851506 - 2851543
Alignment:
| Q |
176 |
tcaactttgtttggtttaatagattttttcatgtattc |
213 |
Q |
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| T |
2851506 |
tcaactttgtttggtttaatagactttttcatatattc |
2851543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 10477343 - 10477499
Alignment:
| Q |
26 |
ttaacaaaatttgaaccttgcataaagggtcatagaattctacatattcaactannnnnnngagttttgagtatatctgcaaacatggtttttcgccaac |
125 |
Q |
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| T |
10477343 |
ttaacaaactttgaaccttgcaaaaagggctatagaattctgcatattcatctgtatttttgaattttgagtatatctacaaacatggtttttagccaat |
10477442 |
T |
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| Q |
126 |
ttgtttatcttattgcagaggaaaacacattaaagaatgatgaaagcaactcaactt |
182 |
Q |
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| T |
10477443 |
ttgtttgtcttattgaagaggagaagacatcacagaatgatgatagcaactcaactt |
10477499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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