View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_113 (Length: 223)
Name: NF1412_low_113
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_113 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 486595 - 486403
Alignment:
| Q |
15 |
catcatcatgggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttg |
114 |
Q |
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| T |
486595 |
catcatcatgggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttg |
486496 |
T |
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| Q |
115 |
agggtgtaccttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggt |
207 |
Q |
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| T |
486495 |
agggtgtaccttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggt |
486403 |
T |
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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 43639795 - 43639959
Alignment:
| Q |
34 |
ttgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtaccttaagataa |
133 |
Q |
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| T |
43639795 |
ttgccaaccatcatcaatgattacaaaacttggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtccaccttaaggtaa |
43639894 |
T |
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| Q |
134 |
aatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
198 |
Q |
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| T |
43639895 |
aatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
43639959 |
T |
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