View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_116 (Length: 216)

Name: NF1412_low_116

Description: NF1412

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1412_low_116

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 146; E-Value: 4e-77

Query Start/End: Original strand, 18 - 207

Target Start/End: Original strand, 5979289 - 5979475

Alignment:

Q	18	cattgttcaaagaagaggtatatatatgtagctctcaaaattcgnnnnnnnnnnnnccttcttctttttgagttaattactttatgttaatttgttgtta	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5979289	cattgttcaaagaagaggtatatatatgtagctctcaaaattcgtttttttttt---cttcttctttttgagttaattactttatgttaatttgttgtta	5979385	T

Q	118	attaatgtagaaaaatgaggttgaaaagagtggtgagggtagctgcaataagtttgaagatggctgatattccaacagatgaatattctt	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5979386	attaatgtagaaaaatgaggttgaaaagagtggtgagggtagctgcaataagtttgaagatggctgatattccaacagatgaatattctt	5979475	T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 124 - 207

Target Start/End: Complemental strand, 39255887 - 39255804

Alignment:

Q	124	gtagaaaaatgaggttgaaaagagtggtgagggtagctgcaataagtttgaagatggctgatattccaacagatgaatattctt	207	Q
		\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	39255887	gtaggaaaatgagattgaagagagttgttcgggttcctgcaattagcttgaagatggctgatattccaccagatgattattctt	39255804	T

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