View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_16 (Length: 408)
Name: NF1412_low_16
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 33282814 - 33283093
Alignment:
| Q |
13 |
catatactaccctatttgtacttttcatgatgaccatatgttttcttgacatttctcatgactgatattcttaaagatagaaattgtatttgtagagtta |
112 |
Q |
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| T |
33282814 |
catatactaccctatttgtacttttcatgatgaccatatgttttcttgacatttctcatgactgatattcttaaagatagaaattgtatttgtagagtta |
33282913 |
T |
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| Q |
113 |
ggtgagcataaaccatcatgcttcgtgcattttcaaacacacttaaactagagtctaggaatcacactatatgcaagtatatgaagacaaatttgaatta |
212 |
Q |
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| T |
33282914 |
ggtgagcataaagcatcatgcttcgtgcattttcaaacacacttaaactagagtctaggaatcacactatatgcaagtatatgaagacaaatttgaatta |
33283013 |
T |
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| Q |
213 |
ttcgattctctaaaatcatcatcaacttcagagactaattaatggtttggctaaatatcaatctactaaaaaatgactat |
292 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33283014 |
tttgattctctaaaatcatcatcaacttcagagactaattaatggtttggctaaatatcaatctactcaaaaatgactat |
33283093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 33283177 - 33283294
Alignment:
| Q |
291 |
attagagtgagtaaaccatgttttcaactaagctcattattgtacttcatctaaatgatcttttcatctaacgttccccaaaaattactttcaaagatat |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33283177 |
attagagtgagtaaaccatgttttcaactaagctcattattgtacttcatctaaatggtcttttcatctaacgttccccaaaaattactttcaaagatat |
33283276 |
T |
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| Q |
391 |
gtttttctttttcatctc |
408 |
Q |
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| T |
33283277 |
gtttttctttttcatctc |
33283294 |
T |
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