View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_17 (Length: 395)
Name: NF1412_low_17
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6316383 - 6316023
Alignment:
| Q |
19 |
aatgtccattttgtgtatttagtatgatggaggaactagctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgttt |
118 |
Q |
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| T |
6316383 |
aatgtccattttgtgtatttagtatgatggaggaactagctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgttt |
6316284 |
T |
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| Q |
119 |
gcatctctttcctatttgtttttgttcatctttaatggggttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgcc |
218 |
Q |
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| T |
6316283 |
gcatctctttcctatttgtttttgttcatctttaatggggttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgcc |
6316184 |
T |
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| Q |
219 |
gaagaaaagcccttggaaaagaaagaattgatttcatcatacctttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagttt |
318 |
Q |
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| T |
6316183 |
aaagaaaagcccttggaaaagaaagaattgatttcaccatacctttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagttt |
6316084 |
T |
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| Q |
319 |
ttatttttctactttctttagtagtgaaaatagggacagaactgattctgagtttctgttt |
379 |
Q |
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| T |
6316083 |
ttatttttctactttctttagtagtgaaaatagggacagaactgattctgagtttctgttt |
6316023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 55323569 - 55323506
Alignment:
| Q |
314 |
agtttttatttttctactttctttagtagtgaaaatagggacagaactgattctgagtttctgttt |
379 |
Q |
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| T |
55323569 |
agtttttatttttctactttctttagtagcaaagatgggggcagaactgat--tgagtttctgttt |
55323506 |
T |
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