View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_23 (Length: 370)
Name: NF1412_low_23
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 26 - 360
Target Start/End: Complemental strand, 36921320 - 36920986
Alignment:
| Q |
26 |
tggtaagaaaataaataatgattaattctctaaccttctatgacataacccactttgtttgaatctgcataatgaggaagagcaaatccccttggctgaa |
125 |
Q |
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| T |
36921320 |
tggtaagaaaataaataatgattaattctctaaccttctatgacataacccactttgtttgaatctgcataatgaggaagagcaaatccccttggctgaa |
36921221 |
T |
|
| Q |
126 |
gaacaagttgaccagcaccaacattagtcttagccaaaactggaacttgagaacttaaccaaatgtagtaaccaccaccatctccctcaagcaatggttg |
225 |
Q |
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| T |
36921220 |
gaacaagttgaccagcaccaacattagtcttagccaaaactggaacttgagaacttaaccaaatgtagtaaccaccaccatctccctcaagcaatggttg |
36921121 |
T |
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| Q |
226 |
tgctgtcttcggtgttagatccaactccattgatttcttctagcctttgctcgttaaatttatgaatcagtgatccatttttagttcaaaaagcaatact |
325 |
Q |
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| T |
36921120 |
tgctgtcttcggtgttagatccaactccattgatttcttctagcctttgctcgttaaatttatgaatcagtgatccatttttagttcaaaaagcaatact |
36921021 |
T |
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| Q |
326 |
aaatatatataccacttcaacacacaatatattct |
360 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36921020 |
aaatatatataccacttcaacacacaatatattct |
36920986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 258
Target Start/End: Complemental strand, 36928446 - 36928246
Alignment:
| Q |
58 |
accttctatgacataacccactttgtttgaatctgcataatgaggaagagcaaatccccttggctgaagaacaagttgaccagcaccaacattagtctta |
157 |
Q |
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| T |
36928446 |
accttctacgacgtaaccaactttggaacaatctccataatggggaagagctaagcctcctgggtgaagcacaagatgggcagcaccaacattggtctta |
36928347 |
T |
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| Q |
158 |
gccaaaactggaacttgagaacttaaccaaatgtagtaaccaccaccatctccctcaagcaatggttgtgctgtcttcggtgttagatccaactccattg |
257 |
Q |
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| T |
36928346 |
gccaaaactggaacttgagaacttaaccaaatgtagtaacaaccaccatctccttcaaacaatggttgtgctgccttaggtgttaggtccaactccattg |
36928247 |
T |
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| Q |
258 |
a |
258 |
Q |
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| T |
36928246 |
a |
36928246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 36935001 - 36935058
Alignment:
| Q |
199 |
accaccatctccctcaagcaatggttgtgctgtcttcggtgttagatccaactccatt |
256 |
Q |
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| T |
36935001 |
accaccgtctccttcaaacaatgtttctgctgttttcggtgttaaatccaactccatt |
36935058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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