View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_25 (Length: 370)
Name: NF1412_low_25
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_25 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 5979820 - 5979455
Alignment:
| Q |
7 |
tcgaagaatatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979820 |
tcgaagaaaatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
5979721 |
T |
|
| Q |
107 |
aaagggaaatgatcaaaattgnnnnnnnnnnnctttt--cattcactctatacacgagttcttttttaaaattgaagggtcaatgagcaatctagtgtag |
204 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979720 |
aaagggaaatgatcaaaattgttttttttttttttttttcattcactctatacatgagttcatttttaaaattgaagggtcaatgagcaatctagtgtag |
5979621 |
T |
|
| Q |
205 |
cacatataataaattgttggtccttatagtaagtgatagattcagacgagaactcaattaaaatttttaatataaggttgcctgcttataatcaagtacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5979620 |
cacatataataaattgttggtccttatagtaagtgatagattcagatgagaactcaattaaaatttttaatataaggttgcttgcttataatcaagtacc |
5979521 |
T |
|
| Q |
305 |
ttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5979520 |
ttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaa |
5979455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 39255752 - 39255824
Alignment:
| Q |
298 |
aagtaccttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaa |
370 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
39255752 |
aagtaccttggatgaggtgaacctttaataggtttctgaccatattttctccaagaataatcatctggtggaa |
39255824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 12166315 - 12166366
Alignment:
| Q |
301 |
taccttggatgaggtgatcctttaataggtttctgaccatacttcctccaag |
352 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaag |
12166366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University