View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_26 (Length: 364)
Name: NF1412_low_26
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 29944644 - 29944979
Alignment:
| Q |
16 |
atcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944644 |
atcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccga |
29944743 |
T |
|
| Q |
116 |
acttttaaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaatttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29944744 |
acttttaaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaatttt |
29944843 |
T |
|
| Q |
216 |
aattacttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggtt |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944844 |
aattacttagatatggtggttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggtt |
29944943 |
T |
|
| Q |
316 |
attttgtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944944 |
attttgtaaaggaaaagacacgagttatagtaaatg |
29944979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 30007130 - 30007460
Alignment:
| Q |
21 |
gtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||| | | ||||||| || ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30007130 |
gtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttc |
30007229 |
T |
|
| Q |
121 |
taaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaatta |
220 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
30007230 |
taaggcattcaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatctgaagaagtttaatta |
30007329 |
T |
|
| Q |
221 |
cttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttatttt |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||| |||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30007330 |
cttagatatggttgttgatgaaaccttaagactttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatatttt |
30007429 |
T |
|
| Q |
321 |
gtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
||| | ||||||| |||||||||||||||| |
|
|
| T |
30007430 |
ataacgaaaaagactcgagttatagtaaatg |
30007460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 30001014 - 30001344
Alignment:
| Q |
21 |
gtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttt |
120 |
Q |
| |
|
|||||||||||||| | |||||| |||||||| || |||||| | | ||||||| || ||||||| | | | || |||||||||||||| ||||||| |
|
|
| T |
30001014 |
gtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttt |
30001113 |
T |
|
| Q |
121 |
taaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaatta |
220 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30001114 |
taaggcatccaagagtgatgaaaattcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaatta |
30001213 |
T |
|
| Q |
221 |
cttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttatttt |
320 |
Q |
| |
|
| |||||||||| ||||||||||| ||||||||| |||| ||| |||| || ||| |||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
30001214 |
cctagatatggtggttgatgaaaccttaagactttatcctgttgcacctttattaatccctcgtgaatgtagagagaacataacaattgatgattattct |
30001313 |
T |
|
| Q |
321 |
gtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
30001314 |
ataaaagaaaagacacgagttatagtaaatg |
30001344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 29964860 - 29965180
Alignment:
| Q |
31 |
gaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaaggcatcc |
130 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||| | || |||| | ||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
29964860 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
29964959 |
T |
|
| Q |
131 |
aagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaattacttagatatg |
230 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
29964960 |
aagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatg |
29965059 |
T |
|
| Q |
231 |
gttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgtaaaggaaa |
330 |
Q |
| |
|
|| |||||||| || ||||||||| | || ||| |||||| ||||| ||||||||||||||||| | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
29965060 |
gtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaa |
29965159 |
T |
|
| Q |
331 |
agacacgagttatagtaaatg |
351 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29965160 |
agacacgagttatagtaaatg |
29965180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 351
Target Start/End: Complemental strand, 30009938 - 30009618
Alignment:
| Q |
31 |
gaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaaggcatcc |
130 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||| | || |||| | ||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
30009938 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
30009839 |
T |
|
| Q |
131 |
aagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaattacttagatatg |
230 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
30009838 |
aagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatg |
30009739 |
T |
|
| Q |
231 |
gttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgtaaaggaaa |
330 |
Q |
| |
|
|| |||||||| || ||||||||| | || ||| |||||| ||||| ||||||||||||||||| | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
30009738 |
gtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaa |
30009639 |
T |
|
| Q |
331 |
agacacgagttatagtaaatg |
351 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30009638 |
agacacgagttatagtaaatg |
30009618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 24 - 351
Target Start/End: Complemental strand, 30068383 - 30068055
Alignment:
| Q |
24 |
attgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattg-agtgggctttatccgaactttta |
122 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||| | |||||| || || ||||||||||||| | ||| | ||||||||||| | ||||||| |
|
|
| T |
30068383 |
attgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcactttta |
30068284 |
T |
|
| Q |
123 |
aggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaattact |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
30068283 |
aggcatccaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattact |
30068184 |
T |
|
| Q |
223 |
tagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgt |
322 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||| ||| ||||||| || |||||| | ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
30068183 |
tagatatggtggttgatgaaaccttaagactgtatcctgttgcacccttactagtccctcctaaatgtagagagaacataacaattgatgattattttat |
30068084 |
T |
|
| Q |
323 |
aaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
|||||||||||| || |||| ||||||| |
|
|
| T |
30068083 |
aaaggaaaagacgagaattatggtaaatg |
30068055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 30043868 - 30043538
Alignment:
| Q |
21 |
gtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||| | |||||| || || ||||||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
30043868 |
gtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggctttatctgaacttt |
30043769 |
T |
|
| Q |
121 |
taaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaatta |
220 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| | ||||| || ||||| |
|
|
| T |
30043768 |
taagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaatta |
30043669 |
T |
|
| Q |
221 |
cttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttatttt |
320 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| | || || |||| || || |||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
30043668 |
tttagatatggtggttgatgagaccttaagactttaccccgtagcaccgttactagtccctcgtgaatctagagagagcacaacaattgatggttatttt |
30043569 |
T |
|
| Q |
321 |
gtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
30043568 |
ataaaggaaaagacacgacttatagtaaatg |
30043538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 29953570 - 29953912
Alignment:
| Q |
9 |
gaagaatatcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctt |
108 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || |||||||||||| || ||||||| || || ||||||||||||| ||||| ||||||| |
|
|
| T |
29953570 |
gaagaaaatcatttcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctt |
29953669 |
T |
|
| Q |
109 |
tatccgaacttttaaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaa |
208 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||||| ||||||||||| ||||||||||||||||||||| | |||||| |||||||||| ||||| | |
|
|
| T |
29953670 |
tatccgaacttctaagacatccaagggtaatgaaaatccttcaagatgagatacaaaatgaagtaggaaatgaaagaatgattgaagagaaagatttaga |
29953769 |
T |
|
| Q |
209 |
gaattttaattacttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaatt |
308 |
Q |
| |
|
||| || | ||||||||| ||||| ||| ||||||||||||||||| | || ||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
29953770 |
gaacttaagttacttagagatggtggttcatgaaactttaagactttaccctgttgcacccttattactccctcgtgaatgtagagagagtgtaacaatt |
29953869 |
T |
|
| Q |
309 |
gatggttattttgtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
29953870 |
gatggatattttataaaggaaaagactcgagttatagtaaatg |
29953912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 29946618 - 29946951
Alignment:
| Q |
18 |
catgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggcttt-atccgaa |
116 |
Q |
| |
|
||||| ||||||||| | ||||| || || || |||||||||| |||| ||||| || || |||||||||||| | ||||| |||||||| ||| ||| |
|
|
| T |
29946618 |
catgttattgatcgaccaaacattaaggc-atattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctgaa |
29946716 |
T |
|
| Q |
117 |
cttttaaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaatttta |
216 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||| || | |
|
|
| T |
29946717 |
cttttaaggaatccaagagtgatgaaaacccttcaagatgatatacaaaatgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagttaa |
29946816 |
T |
|
| Q |
217 |
attacttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggtta |
316 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| | || ||| ||||||| ||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
29946817 |
gttacttagatatggtggttcatgaaactttaagactttaccctgttgcacccttgttactccctcgtgaatgtagagagagtataacaattgatggata |
29946916 |
T |
|
| Q |
317 |
ttttgtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29946917 |
ttttataatggaaaagacacgagttatagtaaatg |
29946951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 29995341 - 29995671
Alignment:
| Q |
21 |
gtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||| | |||||| || | ||||||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
29995341 |
gtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggctttatctgaacttt |
29995440 |
T |
|
| Q |
121 |
taaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagagaaggatttgaagaattttaatta |
220 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| | |||| ||||| ||| ||||||| || ||||| |
|
|
| T |
29995441 |
taagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaatta |
29995540 |
T |
|
| Q |
221 |
cttagatatggttgttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaacataacaattgatggttatttt |
320 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| | || ||| |||| || || |||||||||| | |||||||| || || |||||||||||||||| |
|
|
| T |
29995541 |
tttagatatggtggttgatgagaccttaagactttaccctgttgcaccattactagtccctcgtgagtctagagagagcacaataattgatggttatttt |
29995640 |
T |
|
| Q |
321 |
gtaaaggaaaagacacgagttatagtaaatg |
351 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
29995641 |
ataaaggaaaagacacgacttatagtaaatg |
29995671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 43802254 - 43802303
Alignment:
| Q |
99 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
148 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||||||||||||||| |
|
|
| T |
43802254 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
43802303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 43812823 - 43812872
Alignment:
| Q |
99 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
148 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| ||||||||||| |
|
|
| T |
43812823 |
gagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatct |
43812872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University