View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_28 (Length: 358)
Name: NF1412_low_28
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 28081285 - 28081615
Alignment:
| Q |
15 |
tcaaaaggcgaattggagatacaattaggtgcaacaaagaaggaattagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaag |
114 |
Q |
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| T |
28081285 |
tcaaaaggtgaattggagaaacaattaggtgcaacaaagaaggaattagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaag |
28081384 |
T |
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| Q |
115 |
aaatggagaaaacaacgagctcaacaagcccttctaagttaattgacttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatg |
214 |
Q |
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| T |
28081385 |
aaaaggagaaaacaacaagctcaacaagctcttctaagttaattgacttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatg |
28081484 |
T |
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| Q |
215 |
tagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaagagttagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatg |
314 |
Q |
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| T |
28081485 |
cagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaagaattagaccttgatgtgaatcatgctagtgtgtctgttgtgaatgatttgatg |
28081584 |
T |
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| Q |
315 |
attcaacaagcttctgttaacatgggaagta |
345 |
Q |
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| T |
28081585 |
attcaacaagcttctgttaacatgggaagta |
28081615 |
T |
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Back To:
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 12886221 - 12886381
Alignment:
| Q |
165 |
gatattgatgtgaagattatgggttgggatgctatgattaggattcaatgtagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaagagt |
264 |
Q |
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| T |
12886221 |
gatatcgacgtgaagattataggttgggatgcaatgataagggtccaatgcagtaagaaaaaccaccctgcagcgaggttaatggcagcgttaatggagc |
12886320 |
T |
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| Q |
265 |
tagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatgattcaacaagc |
325 |
Q |
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| T |
12886321 |
ttgacctagaagtgcaccatgccagtgtgtctgtggtaaatgatttgatgatacaacaagc |
12886381 |
T |
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