View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_3 (Length: 596)

Name: NF1412_low_3
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_3
NF1412_low_3
[»] chr8 (13 HSPs)
chr8 (23-585)||(5604396-5604955)
chr8 (23-585)||(5630415-5630974)
chr8 (21-570)||(5647923-5648469)
chr8 (74-570)||(5553904-5554400)
chr8 (365-570)||(6307737-6307942)
chr8 (370-570)||(13167632-13167832)
chr8 (365-570)||(32635770-32635975)
chr8 (21-285)||(13167920-13168181)
chr8 (72-284)||(6307444-6307653)
chr8 (100-233)||(9862101-9862234)
chr8 (124-329)||(32636017-32636216)
chr8 (185-327)||(12185047-12185186)
chr8 (185-327)||(12429475-12429614)


Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 23 - 585
Target Start/End: Original strand, 5604396 - 5604955
Alignment:
23 aggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5604396 aggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttct 5604495  T
123 tgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgtgc 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
5604496 tgatatatccagcgaaacccacactcttttatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgc 5604595  T
223 tgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatcat 322  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5604596 tgttcccatcactaat---ggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatcat 5604692  T
323 gttgatttcagtaggagtccaatcatatttgttgattttgagtcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactca 422  Q
    || ||||  ||||  |||||| ||| |||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
5604693 gtcgattgaagtatcagtccagtcacattttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaagttgcactca 5604792  T
423 catccaaaacgtacatcatatcccatatggccttgagaaagaacaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaactt 522  Q
    |||||||| | ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
5604793 catccaaatcctacatcaaaacccatatggccttgagaaagaacaacgtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaactt 5604892  T
523 cagtagaagagtaatggaaccaattttccatgccaggcatagcaggtatcaaaataatatgat 585  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
5604893 cagtagaagggtaatggaaccaattttccatgccaggcatagcaggtatcaaaataatatgat 5604955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 23 - 585
Target Start/End: Complemental strand, 5630974 - 5630415
Alignment:
23 aggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5630974 aggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttct 5630875  T
123 tgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgtgc 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
5630874 tgatatatccagcgaaacccacactcttttatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgc 5630775  T
223 tgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatcat 322  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5630774 tgttcccatcactaat---ggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatcat 5630678  T
323 gttgatttcagtaggagtccaatcatatttgttgattttgagtcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactca 422  Q
    || ||||  ||||  |||||| ||| |||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
5630677 gtcgattgaagtatcagtccagtcacattttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaagttgcactca 5630578  T
423 catccaaaacgtacatcatatcccatatggccttgagaaagaacaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaactt 522  Q
    |||||||| | ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
5630577 catccaaatcctacatcaaaacccatatggccttgagaaagaacaacgtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaactt 5630478  T
523 cagtagaagagtaatggaaccaattttccatgccaggcatagcaggtatcaaaataatatgat 585  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
5630477 cagtagaagggtaatggaaccaattttccatgccaggcatagcaggtatcaaaataatatgat 5630415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 570
Target Start/End: Complemental strand, 5648469 - 5647923
Alignment:
21 ggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttctt 120  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
5648469 ggagaaactatttcttcttgctcattggattgaaaatctgatgaagacatggtctcttcttcaacatgggattcagaaattgttgaagaaactgtttctt 5648370  T
121 cttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgt 220  Q
     ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||| |||| | ||||| | ||    
5648369 gttgatatatccagcgaaacccacactcttttatctctacttcgtcatatagagtttcattcataaagaatgtaaatgtaagctttgaattgtaaatggt 5648270  T
221 gctgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatc 320  Q
    ||| ||| | ||   | ||||||||||||||||||  |||| ||||||||||||||||||| ||   ||||| |||||||  | |||||||| |||| ||    
5648269 gctattcgcgtc---agtaatggcttttgtttgttggactgtatccattatctgcttgcaaatttgtggatcgtaccataaaaccaaatgatttgacttc 5648173  T
321 atgttgatttcagtaggagtccaatcatatttgttgattttgagtcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcact 420  Q
    |||  || |  ||||  | ||||   | ||| | ||   |||  |  | |||||||||||||||| || ||||||||||||||||||||||||||||| |    
5648172 atgcggaatgaagtataattccaggtagattcgatggagttgccttctgtgaaacttgttatacagatcctttcacctgaactattgtccaagtagcatt 5648073  T
421 cacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaac 520  Q
     ||||||||||| |||| || |  ||||   |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||    
5648072 tacatccaaaacctacaccaaaatccatgatgcctggagaaagaaccaagtagtatgcaaaacccaacaaattagaaggaagctcaagagtgtcagaaac 5647973  T
521 ttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggta 570  Q
    ||  ||||||||||||||||||||||||||| | ||||||||||||||||    
5647972 ttgtgtagaagagtaatggaaccaattttccgttccaggcatagcaggta 5647923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 74 - 570
Target Start/End: Complemental strand, 5554400 - 5553904
Alignment:
74 ttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatataga 173  Q
    ||||||||||||||  |||||||||||| | |||||||||||||| |||||||| |||||| |||| |||||||||| ||| ||||||||||||||||||    
5554400 ttcttcttcatcatgtgattcagaaattatcgaagaaactgtttcctcttgataaatccagtgaaatccacactcttttatttctacttcatcatataga 5554301  T
174 gtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgtgctgttcccatcactaataatggcttttgtttgttcaactgcatccattatct 273  Q
    ||||||| ||||||||||||||| ||||| ||||||  |||||| ||| ||||| | ||| |||| |   ||||| ||||||||||||||||||||||||    
5554300 gtttcattaataaagaatgtaaacgtaagctttggatcgtaactggtgttgttcacgtcagtaatga---cttttatttgttcaactgcatccattatct 5554204  T
274 gcttgcaacttctaggatcataccatacgagcaaatgatctgacatcatgttgatttcagtaggagtccaatc---atatttgttgattttgagtctttt 370  Q
    |||||||||||   |||||||||||||  | |||||||||||| ||||||| || |  ||||  | ||||      |||||   | |  | | |  ||||    
5554203 gcttgcaactttctggatcataccataaaaccaaatgatctgaaatcatgtggactgaagtaccattccagctgggatattgtatcaagtcgggcatttt 5554104  T
371 gaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaag 470  Q
    ||||| | || | || |||||||||||||||||||||||||||||||||||| |||| |||| || |||| |||  ||| | ||||| |||||||| |||    
5554103 gaaacattttttccagattctttcacctgaactattgtccaagtagcactcatatccgaaacctatatcagatcttatacgaccttgtgaaagaaccaag 5554004  T
471 tagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggta 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
5554003 tagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagctggta 5553904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 365 - 570
Target Start/End: Original strand, 6307737 - 6307942
Alignment:
365 tcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaaga 464  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||    
6307737 tcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatccacatcatatcccatatggccttgagaaaga 6307836  T
465 acaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatag 564  Q
    || |||||||| | ||| |||   |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
6307837 accaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatag 6307936  T
565 caggta 570  Q
    ||||||    
6307937 caggta 6307942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 370 - 570
Target Start/End: Complemental strand, 13167832 - 13167632
Alignment:
370 tgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaa 469  Q
    |||||||||||||| | | | ||||||| ||| ||||||||||| |||||||||||||||||  |||| ||||||||||| |||||||||||||||| ||    
13167832 tgaaacttgttatatagactttttcaccagaattattgtccaagaagcactcacatccaaaatctacaccatatcccatacggccttgagaaagaaccaa 13167733  T
470 gtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggt 569  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
13167732 gtagtaggcaaaacccgacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggt 13167633  T
570 a 570  Q
    |    
13167632 a 13167632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 365 - 570
Target Start/End: Complemental strand, 32635975 - 32635770
Alignment:
365 tcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaaga 464  Q
    |||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||    
32635975 tcttgtgaaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacatccaaaatctacaccatatcccatatggcctggagaaaga 32635876  T
465 acaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatag 564  Q
    || |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||  ||||||| || ||| ||||||| ||| |||||||||||||    
32635875 accaagtagtaggcaaaacccaacaaattaggaggaagctcaagagtaacagaaacttgtgtagaagggtgatgaaaccaatattctatgccaggcatag 32635776  T
565 caggta 570  Q
    ||||||    
32635775 caggta 32635770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 13168181 - 13167920
Alignment:
21 ggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttctt 120  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||| ||| |||||||||||    
13168181 ggaggaactattacttcttgatcattggattgaaaatccgatgaagatgcaatttcttcttcatcatgggattcagaaattgttaaaggaactgtttctt 13168082  T
121 cttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgt 220  Q
    | | ||| |||||| ||||||||||||||| |||| |||||||||| |||| | |||||| |||||||||| |||||||||| |||||| ||||||| ||    
13168081 ccttatacatccagtgaaacccacactcttttatcactacttcatcgtatatattttcatgaataaagaatctaaatgtaagctttggattgtaactagt 13167982  T
221 gctgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaacttc 285  Q
    | ||||| ||||   | ||  ||||||| ||| ||||| ||| |||||||| |||||||||||||    
13167981 gttgttcacatc---attatcggcttttatttcttcaaatgcttccattatttgcttgcaacttc 13167920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 72 - 284
Target Start/End: Original strand, 6307444 - 6307653
Alignment:
72 gtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatata 171  Q
    |||||||||| |||||  |||||| |||||||||||| ||  |||||||| | |||||||||| |||| |||||||||| ||||  ||||||||||||||    
6307444 gtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatata 6307543  T
172 gagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgtgctgttcccatcactaataatggcttttgtttgttcaactgcatccattat 271  Q
    ||  ||| |||||||||||| |||||||||| |||||| || |||| ||||||||| ||||   | |||||| |||| ||| |||||||||  |||||||    
6307544 gatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatc---attaatggattttatttcttcaactgctgccattat 6307640  T
272 ctgcttgcaactt 284  Q
    |||||||||||||    
6307641 ctgcttgcaactt 6307653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 9862101 - 9862234
Alignment:
100 ttgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgt 199  Q
    |||||| || |||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||    
9862101 ttgttggagcaactatttcttcttgatatatccagcgaaccccacactcttttatcgctacttcatcatatatagtttcatcaataaagaatctaaatgt 9862200  T
200 aagatttggagtgtaactcgtgctgttcccatca 233  Q
    ||| |||||| ||||||| || |||||| |||||    
9862201 aagctttggattgtaactagttctgttcacatca 9862234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 329
Target Start/End: Complemental strand, 32636216 - 32636017
Alignment:
124 gatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagatttggagtgtaactcgtgct 223  Q
    ||||||||||| |||| ||||||||| |||||  | |||||| |  | | ||||| |||||||||||| |||| ||||| |||||| ||||| |   | |    
32636216 gatatatccagtgaaaaccacactctactatcatttcttcattacgttgggtttcttcaataaagaatctaaaagtaagctttggattgtaatt---gat 32636120  T
224 gttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgatctgacatcatg 323  Q
    | || ||||| |||| |    |||||||| ||||||||| ||||||||||| ||||||||||  ||||||||||| |  | || ||||| ||||||||||    
32636119 gatcacatcattaatgaa---ttttgtttcttcaactgcttccattatctgtttgcaacttcgtggatcataccacaaaaccacatgatgtgacatcatg 32636023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 12185186 - 12185047
Alignment:
185 aaagaatgtaaatgtaagatttggagtgtaactcgtgctgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaactt 284  Q
    ||||||||||||||| || |||||| ||||||| ||||||||| | ||||   | |||||||| |||||||||| || || ||||||||| || ||  ||    
12185186 aaagaatgtaaatgtgagctttggattgtaactggtgctgttcacgtcac---ttatggctttcgtttgttcaattgtattcattatctgtttccatttt 12185090  T
285 ctaggatcataccatacgagcaaatgatctgacatcatgttga 327  Q
    |  ||||||||||| |  | ||||| ||||||||||| |||||    
12185089 cgtggatcataccaaaaaaccaaattatctgacatcaggttga 12185047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 12429614 - 12429475
Alignment:
185 aaagaatgtaaatgtaagatttggagtgtaactcgtgctgttcccatcactaataatggcttttgtttgttcaactgcatccattatctgcttgcaactt 284  Q
    ||||||||||||||| || |||||| ||||||| ||||||||| | ||||   | |||||||| |||||||||| || || ||||||||| || ||  ||    
12429614 aaagaatgtaaatgtgagctttggattgtaactggtgctgttcacgtcac---ttatggctttcgtttgttcaattgtattcattatctgtttccatttt 12429518  T
285 ctaggatcataccatacgagcaaatgatctgacatcatgttga 327  Q
    |  ||||||||||| |  | ||||| ||||||||||| |||||    
12429517 cgtggatcataccaaaaaaccaaattatctgacatcaggttga 12429475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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