View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_31 (Length: 352)

Name: NF1412_low_31
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_31
NF1412_low_31
[»] chr6 (2 HSPs)
chr6 (13-339)||(33513689-33514015)
chr6 (76-136)||(31237194-31237253)
[»] chr2 (6 HSPs)
chr2 (74-142)||(1688039-1688107)
chr2 (87-122)||(40365651-40365686)
chr2 (73-136)||(3369871-3369934)
chr2 (73-111)||(4283410-4283448)
chr2 (78-118)||(43078025-43078065)
chr2 (73-117)||(43664779-43664823)
[»] chr3 (4 HSPs)
chr3 (65-120)||(55406864-55406919)
chr3 (74-118)||(28309542-28309586)
chr3 (73-140)||(12790015-12790082)
chr3 (83-136)||(21758362-21758415)
[»] chr8 (4 HSPs)
chr8 (68-136)||(33274224-33274292)
chr8 (65-115)||(38894477-38894527)
chr8 (74-120)||(18310479-18310525)
chr8 (87-115)||(39400908-39400936)
[»] chr7 (1 HSPs)
chr7 (65-107)||(44599444-44599486)
[»] chr1 (6 HSPs)
chr1 (73-146)||(1607317-1607390)
chr1 (73-122)||(50075558-50075607)
chr1 (73-120)||(35652566-35652613)
chr1 (65-118)||(7789518-7789571)
chr1 (73-118)||(24439206-24439251)
chr1 (68-141)||(30321922-30321995)
[»] chr4 (1 HSPs)
chr4 (73-140)||(27574671-27574737)
[»] scaffold0172 (1 HSPs)
scaffold0172 (73-125)||(26430-26482)
[»] scaffold0095 (1 HSPs)
scaffold0095 (87-115)||(36566-36594)
[»] chr5 (1 HSPs)
chr5 (73-137)||(16153691-16153755)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 33514015 - 33513689
Alignment:
Q  13 aatattgggactaaatctatgactttgcttgttcgtctagattcatcttttctataaattcacaatttttaaagttaaatttttacatttaatttcttat 112  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| ||||||||| |||||||| ||||||||    
T  33514015 aatatttgaactaaatctatgactttgcttgttcatctagattcatcttttttatgaatgcacaatttttaaggttaaatttctacatttagtttcttat 33513916  T
Q  113 cttgtgtctttaaagcacaagttagcaaaatccattatttaattattatcactaattctcattatttttgtctcttactcaagaaaagagttaagagaga 212  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33513915 cttgtgtctttaaggcacaaattagcaaaatccattatttaattattatcactaatcctcattatttttgtatcttactcaagaaaagagttaagagaga 33513816  T
Q  213 ggaaataagaagaatataatannnnnnnnggtcaagcctaagttcagttgttaataatgcacaattttatattttgcagcaaaagataatggaagtcata 312  Q
    |||||||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33513815 ggaaataaaaagaatataatattttttttggtcaagcctaagttcagttgttaataatgcacaattttatattttgcagcaaaagataatggaagtcata 33513716  T
Q  313 taaaatatgaccaagattatttgatca 339  Q
    |||||||||||||||||||||||||||    
T  33513715 taaaatatgaccaagattatttgatca 33513689  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 31237253 - 31237194
Alignment:
Q  76 aatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagtta 136  Q
    |||||||||| ||||||||||  ||||||||||||||||||||  ||||| | ||||||||    
T  31237253 aatttttaaaattaaatttttt-atttaatttcttatcttgtgcttttaaggaacaagtta 31237194  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 1688039 - 1688107
Alignment:
Q  74 acaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttagcaaaa 142  Q
    |||||||||||| ||||||||||||||||| ||| |||||| ||| | |||| ||||||||||||||||    
T  1688039 acaatttttaaaattaaatttttacatttagtttattatctagtgcccttaaggcacaagttagcaaaa 1688107  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 40365686 - 40365651
Alignment:
Q  87 ttaaatttttacatttaatttcttatcttgtgtctt 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  40365686 ttaaatttttacatttaatttcttatcttgtgtctt 40365651  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 3369934 - 3369871
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagtta 136  Q
    ||||||||||||  || ||||| |||||||| ||||||||||| ||||||||  ||||||||||    
T  3369934 cacaatttttaagattgaatttctacatttagtttcttatcttatgtctttagggcacaagtta 3369871  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 4283448 - 4283410
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttctta 111  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  4283448 cacaatttttaaagttaaatttctacatttagtttctta 4283410  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 43078065 - 43078025
Alignment:
Q  78 tttttaaagttaaatttttacatttaatttcttatcttgtg 118  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  43078065 tttttaatattaaatttttacatttagtttcttatcttgtg 43078025  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 43664823 - 43664779
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgt 117  Q
    ||||||||||||  |||||||| |||||||||||| |||||||||    
T  43664823 cacaatttttaagattaaatttctacatttaattttttatcttgt 43664779  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 55406919 - 55406864
Alignment:
Q  65 tataaattcacaatttttaaagttaaatttttacatttaatttcttatcttgtgtc 120  Q
    ||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  55406919 tataaatgcacaatttttaaagttaaatttttttatttagtttcttatcttgtgtc 55406864  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 28309542 - 28309586
Alignment:
Q  74 acaatttttaaagttaaatttttacatttaatttcttatcttgtg 118  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  28309542 acaatttttaaagttaaatttttacatttagttttttatcttgtg 28309586  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 12790082 - 12790015
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttagcaa 140  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||   ||||  |||||||||||||    
T  12790082 cacaatttacaaagttaaatttctacatttaatttcttatcttgtgctcttaatacacaagttagcaa 12790015  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 21758362 - 21758415
Alignment:
Q  83 aaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagtta 136  Q
    |||||||||||| |  |||||||||||||||||||||| |||  ||||||||||    
T  21758362 aaagttaaatttctttatttaatttcttatcttgtgtccttagggcacaagtta 21758415  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 33274292 - 33274224
Alignment:
Q  68 aaattcacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagtta 136  Q
    |||| |||||||||||| ||||| |||||||||||| |||||||||||||| | |||  ||||||||||    
T  33274292 aaatgcacaatttttaaggttaagtttttacatttagtttcttatcttgtgcccttagggcacaagtta 33274224  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 38894527 - 38894477
Alignment:
Q  65 tataaattcacaatttttaaagttaaatttttacatttaatttcttatctt 115  Q
    ||||||| ||||||||| ||| ||||||||||| |||||||||||||||||    
T  38894527 tataaatgcacaattttcaaaattaaatttttatatttaatttcttatctt 38894477  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 18310525 - 18310479
Alignment:
Q  74 acaatttttaaagttaaatttttacatttaatttcttatcttgtgtc 120  Q
    ||||||| |||  |||||||||||||||||||||||||| |||||||    
T  18310525 acaatttctaagattaaatttttacatttaatttcttattttgtgtc 18310479  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 39400936 - 39400908
Alignment:
Q  87 ttaaatttttacatttaatttcttatctt 115  Q
    |||||||||||||||||||||||||||||    
T  39400936 ttaaatttttacatttaatttcttatctt 39400908  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 44599444 - 44599486
Alignment:
Q  65 tataaattcacaatttttaaagttaaatttttacatttaattt 107  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  44599444 tataaatgcacaatttttaaggttaaatttttacatttaattt 44599486  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 1607390 - 1607317
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttagcaaaatcca 146  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||| | | |  |||||||||| |||||||||    
T  1607390 cacaattttcaaagttaaatttctacatttagtttcttatattgtgccctaagggcacaagttaacaaaatcca 1607317  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 50075607 - 50075558
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctt 122  Q
    |||||||||||| ||||||||| |  ||||||||||||||||||||||||    
T  50075607 cacaatttttaaggttaaatttctttatttaatttcttatcttgtgtctt 50075558  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 35652566 - 35652613
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtc 120  Q
    ||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  35652566 cacaattttcaaagttaagtttctacatttagtttcttatcttgtgtc 35652613  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 7789518 - 7789571
Alignment:
Q  65 tataaattcacaatttttaaagttaaatttttacatttaatttcttatcttgtg 118  Q
    ||||||| ||||||||| ||  ||||| ||||||||||| ||||||||||||||    
T  7789518 tataaatgcacaattttcaagattaaacttttacatttagtttcttatcttgtg 7789571  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 24439206 - 24439251
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtg 118  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| ||||    
T  24439206 cacaattttcaaaattaaatttttacatttagtttcttatcgtgtg 24439251  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 30321995 - 30321922
Alignment:
Q  68 aaattcacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttagcaaa 141  Q
    |||| ||||||||||||  |||| ||| |||||||| ||||||||||||||   |||| |||||||||| ||||    
T  30321995 aaatgcacaatttttaagattaagtttctacatttagtttcttatcttgtgatcttaaggcacaagttaacaaa 30321922  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 27574671 - 27574737
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttagcaa 140  Q
    |||||||||||||||||||||| ||  || | ||||||||||||||||  | ||||||||||||||||    
T  27574671 cacaatttttaaagttaaatttctatgttcagtttcttatcttgtgtc-ctcaagcacaagttagcaa 27574737  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 26430 - 26482
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaa 125  Q
    |||||||||  | ||||||||||||| |||||||||||||||| |||| ||||    
T  26430 cacaattttcgaggttaaatttttacgtttaatttcttatcttatgtccttaa 26482  T

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Target: scaffold0095 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 36566 - 36594
Alignment:
Q  87 ttaaatttttacatttaatttcttatctt 115  Q
    |||||||||||||||||||||||||||||    
T  36566 ttaaatttttacatttaatttcttatctt 36594  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 16153755 - 16153691
Alignment:
Q  73 cacaatttttaaagttaaatttttacatttaatttcttatcttgtgtctttaaagcacaagttag 137  Q
    ||||||||| ||| ||||||||||| ||||| ||| ||||||| || | |||| |||||||||||    
T  16153755 cacaattttcaaaattaaatttttagatttagtttattatcttatgcccttaaggcacaagttag 16153691  T

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